View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14045_low_4 (Length: 533)
Name: NF14045_low_4
Description: NF14045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14045_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 454; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 12 - 515
Target Start/End: Original strand, 30888386 - 30888888
Alignment:
| Q |
12 |
cgaagaatatgaaacaagttaactaaaatttgcacattttaatcgaaaggtgttctaattaagcatggtattggatttggaacacagtgatgcagagcta |
111 |
Q |
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| T |
30888386 |
cgaacaatatgaaacaagttaactaaaatttgcacattttaatcgaaaggtgttctaattaagcatggtattggatttggaacacagtgatgcagagcta |
30888485 |
T |
|
| Q |
112 |
actaatagttctaagtgttttgtttgagaacatatatacaagtaatctaaagtatgttcttggtttggttaatttttctatgttattaaccaagaacaat |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
30888486 |
actaatagttctaagtgttttgtttgagaacatatatacaagtaatctaaagtatgttcttggtttggttaatttttctatgttattagccaagaacaat |
30888585 |
T |
|
| Q |
212 |
catgagggaaattgttatgattgcaactgctgctacacttgggaatttgttggtgggatgggatagttcaaccattgcaggtgtgtgtgcgcgctcatgt |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |
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| T |
30888586 |
catgagggaaattgttatgattgcaactgctgctacacttgggaatttgttggtgggatgggatagttcaaccattgcaggtgtgtgt--gcgctcgtgt |
30888683 |
T |
|
| Q |
312 |
atattttattatgacatctcttctattgtttatttgtg-ttattgtcattgttaagatatgtatttaattattggacacagcattgacacgttgacaccg |
410 |
Q |
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|||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |
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| T |
30888684 |
gtattttattatggcatctcttctattgtttatttgtgtttattgtcattgttaagatatgtatttaattactggacacagcattgacacgtcgacaccg |
30888783 |
T |
|
| Q |
411 |
gtaaaaatttaatgagacgagttaattgaatgtatttacatgtatcagtgttgtgtcaatgtccgaacacgccttgtgtcgtgctaacttgtgttgtgta |
510 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30888784 |
gtaaaaatttaatgagacaagttaattgaatgtatttacatgtatcagtgttgtgtcaatgtccgaacacgccttgtgtcgtgctaacttgtgttgtgta |
30888883 |
T |
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| Q |
511 |
tgata |
515 |
Q |
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| T |
30888884 |
tgata |
30888888 |
T |
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