View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14045_low_5 (Length: 466)
Name: NF14045_low_5
Description: NF14045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14045_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 14 - 414
Target Start/End: Complemental strand, 8076065 - 8075676
Alignment:
| Q |
14 |
tactcttaaagggggagtgtacatgctacgactctaatacttaagttagtgagggttttatgagagtctaggtattttaactagaattgagaacgtacct |
113 |
Q |
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| T |
8076065 |
tactcttaaaaggggagtgtacatactacgactctaatacttaagttagtgagggttttatgagagtctaggtattttaactagaattgagaacgtacct |
8075966 |
T |
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| Q |
114 |
ttcactaaagattaaaattttatagttgatgtgttaatggcaatcgagatcaaaatggttatttcattattagtaattttgtgttattcaagattcgctg |
213 |
Q |
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| T |
8075965 |
ttcactaaagattaaaattttatagttgatgtgttaatggcaatcaagatcaaaatggttatttcattattagtaattttgtgttattcaagattcgctg |
8075866 |
T |
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| Q |
214 |
catatgttcaggattcgttgttaataatttatggcatctttcatttattttataaatggatatgatctttactcgagaatcatgattcgatcacaaggaa |
313 |
Q |
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| T |
8075865 |
tagatgttcaggattcgttgttaataatttatggcatctttcatttattttataaatggatatgatctttactcgagaatcataattagatcacaaggaa |
8075766 |
T |
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| Q |
314 |
tgtcccaatgtctcattatagtagtacatttaaatgaaatgtgattcaattacaatacttttgttgattttctttcttccataaacttgttcccgtataa |
413 |
Q |
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| T |
8075765 |
tgtcc--------catta---tagtacatttgaatgaaatgtgattcaattacaatacttttgttgattttctttcttccataaacttgttcccgtataa |
8075677 |
T |
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