View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14045_low_6 (Length: 463)
Name: NF14045_low_6
Description: NF14045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14045_low_6 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 1 - 463
Target Start/End: Original strand, 39272542 - 39273003
Alignment:
| Q |
1 |
ccaccagccatggtaacacatccttgatatgtttcataggaagggtcaaagagtatgacttcgtcgcctgggtcaattgctgtttgaaacagaacatact |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39272542 |
ccaccagccatggtaacacatccttgatatgtttcataggaagggtcaaagagtatgacttcgtcgcctgggtcaattgctgtttgaaacagaacatact |
39272641 |
T |
|
| Q |
101 |
atgctattagaggaagnnnnnnnncactgtgtagtaccaacacttgatattgaagacgtgttggtgtagaaaacttgtaagcactaacaccaacacatgt |
200 |
Q |
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||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
39272642 |
atgctattagaggaa-aaaaaacacactgtgtagtaccaacacttcatattgaagacgtgttggtgtagaaaacttgtaagcactaacgccaacacatgt |
39272740 |
T |
|
| Q |
201 |
tcttacattcaattacttgtattatcttaaatgataaacggcaatgtatcagtgtcgatattgtgtacggtgtatgtgtcagcttgaactaaaacaataa |
300 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |
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| T |
39272741 |
tcttacattcaattacttgtattaacttaaatgataaacggcaatgtatcagtgtcggtattgtgtaaggtgtatgtgtcagcttgaactaaaacaataa |
39272840 |
T |
|
| Q |
301 |
aacaataaagagcatacttgcaaagattgcagcagcaaaagcctcagtttgaccacaacagatagctacatccgtctcagaatcaatatctaaaccatgc |
400 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
39272841 |
aactataaagagcatacttgcaaagattgcagcagcaaaagcctcagtttgaccacaacagatagctacatccgtctcagagtcaatatctaaaccatgc |
39272940 |
T |
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| Q |
401 |
atttcctttactatcttagccaagtgttcacatataccttgcacatgccttgaaatacaaaga |
463 |
Q |
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| T |
39272941 |
atttcctttactatcttagccaagtgttcacatataccttgcacatgccttgaaatacaaaga |
39273003 |
T |
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