View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14045_low_7 (Length: 452)
Name: NF14045_low_7
Description: NF14045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14045_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 13 - 436
Target Start/End: Original strand, 34616797 - 34617216
Alignment:
| Q |
13 |
cagacaggaagaattccgttggatctcaatatccatgcaccaattgctatcaaatttgggaggttgaagttgaagaaggtgaaagttttgggtcgatgtc |
112 |
Q |
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| T |
34616797 |
cagacaggaagaattccgttggatctcaatatccatgcaccaattgctatcaaatttgggaggttgaagttgaagaaggtgaaagttttgggtcgatgtc |
34616896 |
T |
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| Q |
113 |
aattggtggtcgatagcttatcgtctaataatcttgtaagcatcaaggctagcaactgtaacttcaagctgaaactttaaatgtatcatcaggggagagt |
212 |
Q |
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| T |
34616897 |
aattggtggtcgatagcttatcgtctaataatcttgtaagcatcaaggctagcaactgtaacttcaagctgaaactttaaatgtatca---ggggagagt |
34616993 |
T |
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| Q |
213 |
ttgccttagttcatgtgatttttcttatagttgggacatcgtaaacttgattcttttatgaatactaaactgctattgtagcagttcctcgcagtatttt |
312 |
Q |
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| T |
34616994 |
ttgccttagttcatgtgatttttcttatagttgg-acatcgtaaacttgattcttttatgaatactaaactgctattgtagcagttcctcgcagtatttt |
34617092 |
T |
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| Q |
313 |
tgtatttgtcttctgtttgtatcattgttggtttggttcacaacatttattcgacaacatatcggactggcttgattatcattgtgtatgttagtcattc |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34617093 |
tgtatttgtcttctgtttgtatcattgttggtttggttcacaacatttattcgacaacatatcggactggcttgattatcattgtgtatgttagtcattc |
34617192 |
T |
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| Q |
413 |
tagcttcttcaacatgtagtttgt |
436 |
Q |
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|||||||||||||||||||||||| |
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| T |
34617193 |
tagcttcttcaacatgtagtttgt |
34617216 |
T |
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