View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14045_low_8 (Length: 339)
Name: NF14045_low_8
Description: NF14045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14045_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 309; Significance: 1e-174; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 12 - 324
Target Start/End: Original strand, 1372911 - 1373223
Alignment:
| Q |
12 |
atagggcgctcaagaaccaaatagggtggaaaaagtaatggctaatattgattgccccagtaaggagccagagcctgaaaaaagtaccatacatgattga |
111 |
Q |
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| T |
1372911 |
atagggcgctcaagaaccaaatagggtggaaaaagtaatggctaatattgattgccccagtaaggagccagagcctgaaaaaagtaccatacatgattga |
1373010 |
T |
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| Q |
112 |
tatttgtggaggcattaatagtcgcaaaactacacgtggcaatttcatattggtggctaatgataaggctagcacaaaaatttccattcctgtgtggttg |
211 |
Q |
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| T |
1373011 |
tatttgtggaggcattaatagtcacaaaactacacgtggcaatttcatattggtggctaatgataaggctagcacaaaaatttccattcctgtgtggttg |
1373110 |
T |
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| Q |
212 |
atatggcagcaaagtttatcatattcacaaccaacaaaatggtattatgaagcattaccacaatttataagaccataatattggaaatagaaaattaaaa |
311 |
Q |
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| T |
1373111 |
atatggcagcaaagtttatcatattcacaaccaacaaaatggtattatgaagcattaccacaatttataagaccataatattggaaatagaaaattaaaa |
1373210 |
T |
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| Q |
312 |
atagtatatatat |
324 |
Q |
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| T |
1373211 |
atagtatatatat |
1373223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 71 - 321
Target Start/End: Original strand, 1383248 - 1383491
Alignment:
| Q |
71 |
gtaaggagccagagcctgaaaaaagtaccatacatgattgatatttgtggaggcattaatagtcgcaaaactacacgtggcaatttcatattggtggcta |
170 |
Q |
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| T |
1383248 |
gtaaggagccaatgcctgaaaaaagtaccatagatgattgatatttgtggaggcattaatagtcacaaaactacacgtggcaatttcatattggtggcta |
1383347 |
T |
|
| Q |
171 |
atgataaggctagcacaaaaatttccattcctgtgtggttgatatggcagcaaagtttatcatattcacaaccaacaaaatggtattatgaagcattacc |
270 |
Q |
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| T |
1383348 |
atgataaggctagcacaaaaatttccattcctgtgtggttgatatggcagcaaagtttatcatattc-------acaaaatggtattatgaagcattacc |
1383440 |
T |
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| Q |
271 |
acaatttataagaccataatattggaaatagaaaattaaaaatagtatata |
321 |
Q |
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| T |
1383441 |
acaatttataagaccataatattggaaatagaaaaataaaaacattatata |
1383491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 71 - 321
Target Start/End: Original strand, 1389353 - 1389596
Alignment:
| Q |
71 |
gtaaggagccagagcctgaaaaaagtaccatacatgattgatatttgtggaggcattaatagtcgcaaaactacacgtggcaatttcatattggtggcta |
170 |
Q |
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| T |
1389353 |
gtaaggagccaatgcctgaaaaaagtaccatagatgattgatatttgtggaggcattaatagtcacaaaactacacgtggcaatttcatattggtggcta |
1389452 |
T |
|
| Q |
171 |
atgataaggctagcacaaaaatttccattcctgtgtggttgatatggcagcaaagtttatcatattcacaaccaacaaaatggtattatgaagcattacc |
270 |
Q |
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| T |
1389453 |
atgataaggctagcacaaaaatttccattcctgtgtggttgatatggcagcaaagtttatcatattc-------acaaaatggtattatgaagcattacc |
1389545 |
T |
|
| Q |
271 |
acaatttataagaccataatattggaaatagaaaattaaaaatagtatata |
321 |
Q |
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| T |
1389546 |
acaatttataagaccataatattggaaatagaaaaataaaaacattatata |
1389596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 111 - 323
Target Start/End: Original strand, 1357650 - 1357868
Alignment:
| Q |
111 |
atatttgtggaggcattaatagtcgcaaaactacacgtggcaatttcatattggtggctaatgataaggctagcacaaaaatttcca---ttcctgtgtg |
207 |
Q |
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|||||| |||| |||||||||||| || ||||||||||||||||||||||||||||||||| |||||||| | |||||||||||||| || |||||| |
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| T |
1357650 |
atatttatggaagcattaatagtcacacaactacacgtggcaatttcatattggtggctaaagataaggc-accacaaaaatttccaatcttgttgtgtg |
1357748 |
T |
|
| Q |
208 |
gttgatatggcagcaaagtttatcatattcacaa-ccaacaaaatggtattatgaagca-----ttaccacaatttataagaccataatattggaaatag |
301 |
Q |
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||| ||||| |||| ||||||||| ||||||| | |||||||| |||||||| |||| |||||||||||| || |||||||||||||||||| |
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| T |
1357749 |
gtt--aatggctgcaatgtttatcattttcacaatcaaacaaaattgtattatgcagcaaccagttaccacaatttttagaaccataatattggaaatac |
1357846 |
T |
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| Q |
302 |
aaaattaaaaatagtatatata |
323 |
Q |
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| T |
1357847 |
aaaaataaagacattatatata |
1357868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 169 - 312
Target Start/End: Original strand, 1349767 - 1349915
Alignment:
| Q |
169 |
taatgataaggctagcacaaaaatttccattcctgtgtggttgatatggcagcaaagtttatcatattcacaacc-aacaaaatggtattatgaagca-- |
265 |
Q |
| |
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|||||||||||||| |||| |||||||||||| ||||||||| |||| | ||| | ||||||| |||| || | ||||| |||||||| | || | |
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| T |
1349767 |
taatgataaggctaacacacaaatttccattcttgtgtggttaatataggttcaatgattatcattttcaaaatctaacaagttggtattaggcagtagc |
1349866 |
T |
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| Q |
266 |
---ttaccacaatttataagaccataatattggaaatagaaaattaaaaa |
312 |
Q |
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| T |
1349867 |
caattaccacaatat-taagaccataatattggaaatagaaaaataaaaa |
1349915 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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