View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14045_low_9 (Length: 278)
Name: NF14045_low_9
Description: NF14045
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14045_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 10 - 261
Target Start/End: Original strand, 31241341 - 31241592
Alignment:
| Q |
10 |
ataattctaataagatgggttacaagtaggtgcatgttcttaatcaaatttatctagttaagaaatttatttctaatcttcgagaggaccttgatagtct |
109 |
Q |
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| T |
31241341 |
ataattctaataagatgggttacaagtaggtgcatgttcttaatcaaacttatctagttaagaaatttatttctaatcttcgagaggaccttgatagtcc |
31241440 |
T |
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| Q |
110 |
tgttgaaagctagggtgaccagaattgttgatagaataaaacattattaaggaaaataaataagcaatgnnnnnnntaaggataaatgacatacggattc |
209 |
Q |
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| T |
31241441 |
tgttgaaagctagggtgaccagaattgttgatagaataaaatattattaaggaaaataaataagcaatgaaaaaaataaggataaatgacatatgggttc |
31241540 |
T |
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| Q |
210 |
acatttgtttcagcatccacacaaatctcaagctcacgttgtaatgacttct |
261 |
Q |
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| T |
31241541 |
acatttgtttcagcatccacacaaatctcaagctcacgttgtaatgacttct |
31241592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 130
Target Start/End: Complemental strand, 39689449 - 39689347
Alignment:
| Q |
28 |
gttacaagtaggtgcatgttcttaatcaaatttatctagttaagaaatttatttctaatcttcgagaggaccttgatagtcttgttgaaagctagggtga |
127 |
Q |
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||||||| ||| ||||||||||||| |||||||| ||||||| || | || ||||||| |||| ||||| | ||| ||||||||||||||| |||| |
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| T |
39689449 |
gttacaattagatgcatgttcttaaacaaatttaaacagttaagccatctgttcctaatctgcgaggggaccagggtagccttgttgaaagctagcgtga |
39689350 |
T |
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| Q |
128 |
cca |
130 |
Q |
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||| |
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| T |
39689349 |
cca |
39689347 |
T |
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