View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14046_high_12 (Length: 354)
Name: NF14046_high_12
Description: NF14046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14046_high_12 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 150; Significance: 3e-79; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 19 - 216
Target Start/End: Complemental strand, 399168 - 398971
Alignment:
| Q |
19 |
attgattcgaaggtttaaggtttagttttgattcttacatgtgcatgatctttagttgggtcatgtggattttgtgtcggacttcaaaagagtcgttggg |
118 |
Q |
| |
|
|||||||| ||||| ||||||||| ||||| |||||||||| | ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
399168 |
attgattctaaggtgtaaggtttaattttggttcttacatggggatgatctttagttgggtcatgtggattttgtgtcggactccaaaagagtcgttggg |
399069 |
T |
|
| Q |
119 |
agtttttatagtaataagaataatttcatggcaattgtagcaatttttaatgatcgtagacgtttattaacttcctttgtacaaactaccaccttgag |
216 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||| |
|
|
| T |
399068 |
agttttcatagtaataagaataatttcatggcatttgtagcaatttttaatgatagtagacgtttattaacttcctttctacaaactaccactttgag |
398971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 219 - 340
Target Start/End: Complemental strand, 398139 - 398015
Alignment:
| Q |
219 |
tttgagttcattaaaaacaagtc---gagatggtagtctatgctcttatcaaagcaacctccacgtccttaacaaatttcgaaatcttaatcgatggtct |
315 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
398139 |
tttgagttcattaaaaacaagtcaatgagatggtagtctatgctcttgccaaagcaacctccacgtccttaactaatttcgaaatcttaatcaatggtct |
398040 |
T |
|
| Q |
316 |
tatatgtatcgaacatgttatcatg |
340 |
Q |
| |
|
||||||||| ||||||||||||||| |
|
|
| T |
398039 |
tatatgtattgaacatgttatcatg |
398015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University