View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14046_high_13 (Length: 324)
Name: NF14046_high_13
Description: NF14046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14046_high_13 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 12 - 324
Target Start/End: Complemental strand, 35939116 - 35938804
Alignment:
| Q |
12 |
aatactcaatatcattatcatttaannnnnnnaatattaaaatataataataattgaagagagtcactataaaagtacacatctctataaatactccttt |
111 |
Q |
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| T |
35939116 |
aatactcaatatcattatcatttaatttttttaatattaaaatataataataattgaagagagtcactataaaagtacacatctctataaatactctttt |
35939017 |
T |
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| Q |
112 |
ttcaaaaaatctctataaatactcatatttcttatgcaacaatgagaatgtctatttagcactttcgcttataaggataaatacctaccatcgtagatgc |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35939016 |
ttcaaaaaatctctataaatactcatatttcttatgcaacaatgagaatgtctatttagcactttcgcttataaggataaatacctaccatcgtagatgc |
35938917 |
T |
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| Q |
212 |
ctaaggggaaaaatagaagagaaatgtgtatgtcatgtcatttaaacaaagaaagttaatatnnnnnnnggaataactatatgatgtttagatgtttcag |
311 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
35938916 |
ctaaggggaaaaatagaagagaaatgtgtatgtaatgtcatttaaacaaagaaagttaatataaaaaaaggaataactatatgatgtttagatgtttcag |
35938817 |
T |
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| Q |
312 |
tacccaacaaaaa |
324 |
Q |
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||||||||||||| |
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| T |
35938816 |
tacccaacaaaaa |
35938804 |
T |
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