View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14046_high_15 (Length: 292)
Name: NF14046_high_15
Description: NF14046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14046_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 41 - 272
Target Start/End: Complemental strand, 1600090 - 1599842
Alignment:
| Q |
41 |
attattctccatagttgcattactaaataatcagttgaagattgaaatgcaacttt----------------acaagacattggatgagatggtgaggtg |
124 |
Q |
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| T |
1600090 |
attattctccatagttgcattactaaataatcagttgaagattgaaatgcaactttggtaaattacaactttacaagacattggatgagatggtgaggtg |
1599991 |
T |
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| Q |
125 |
atgctagtcatattcctgcagtctcagaatggaagcctgatttcttcttctgctggagggtgtgatttggttctcttaaattttctgaagcctttttcgt |
224 |
Q |
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| T |
1599990 |
aggctagtcatattcctgcagtctcagaatggaagcctgatttcttcttctgctggagggtgtgatttggttctcttaaattttctgaagcctttttcgt |
1599891 |
T |
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| Q |
225 |
ttcgttactt-aaataacgttttcaatagtaaaatagtagtagtctttg |
272 |
Q |
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| T |
1599890 |
ttctttacttaaaataacgttttcaatagtaaaatagtagtagtctttg |
1599842 |
T |
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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 134 - 195
Target Start/End: Original strand, 5769010 - 5769071
Alignment:
| Q |
134 |
atattcctgcagtctcagaatggaagcctgatttcttcttctgctggagggtgtgatttggt |
195 |
Q |
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| T |
5769010 |
atatttctggagtctaggaatggatacctgatttcttcttctgctggaaggtgtgatttggt |
5769071 |
T |
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