View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14046_high_19 (Length: 266)

Name: NF14046_high_19
Description: NF14046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14046_high_19
NF14046_high_19
[»] chr1 (2 HSPs)
chr1 (153-249)||(48421204-48421300)
chr1 (10-93)||(48421360-48421441)
[»] chr4 (1 HSPs)
chr4 (152-235)||(25329365-25329447)
[»] chr3 (2 HSPs)
chr3 (152-214)||(1388312-1388374)
chr3 (162-226)||(28437224-28437288)
[»] chr8 (1 HSPs)
chr8 (152-195)||(26654538-26654581)
[»] chr7 (1 HSPs)
chr7 (152-207)||(35552467-35552522)
[»] chr5 (1 HSPs)
chr5 (152-195)||(35966592-35966635)


Alignment Details
Target: chr1 (Bit Score: 89; Significance: 6e-43; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 153 - 249
Target Start/End: Complemental strand, 48421300 - 48421204
Alignment:
Q  153 aaactaaagaaataaagagagaagaaagtaggatgatatatttatatttctcaaagatggtgcaaatttacatggactaaagttcggcacttatatt 249  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  48421300 aaactaaagaaataaagagagaagaaagtaggacgatatatttatatttctcaaagatggtgcaaatttacatgggctaaagttcggcacttatatt 48421204  T

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Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 10 - 93
Target Start/End: Complemental strand, 48421441 - 48421360
Alignment:
Q  10 ataattctaatccaaaaataggaatctgataaaaaaccatatttgaatatttttctttgatggtatttgtgaattaataggatg 93  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  48421441 ataattctaatccaaaaataggaatctgataaaaaaccatatttgaata--tttctttgatggtatttgtgaattaataggatg 48421360  T

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Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 152 - 235
Target Start/End: Original strand, 25329365 - 25329447
Alignment:
Q  152 caaactaaagaaataaagagagaagaaagtaggatgatatatttatatttctcaaagatggtgcaaatttacatggactaaagt 235  Q
    |||| |||| ||||||||||||||||||| || ||||||||| ||||||||||||| ||||||||  |||||||| ||||||||    
T  25329365 caaattaaataaataaagagagaagaaagcagtatgatatatctatatttctcaaa-atggtgcatctttacatgaactaaagt 25329447  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 152 - 214
Target Start/End: Complemental strand, 1388374 - 1388312
Alignment:
Q  152 caaactaaagaaataaagagagaagaaagtaggatgatatatttatatttctcaaagatggtg 214  Q
    |||||||||||||| |||||||||| || |||||||||||||||  || ||||||| ||||||    
T  1388374 caaactaaagaaatcaagagagaaggaactaggatgatatattttgatatctcaaaaatggtg 1388312  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 226
Target Start/End: Complemental strand, 28437288 - 28437224
Alignment:
Q  162 aaataaagagagaagaaagtaggatgatatatttatatttctcaaagatggtgcaaatttacatg 226  Q
    |||| |||||||||| |||||||||||||| |||  |||||||||| ||| ||||  ||||||||    
T  28437288 aaatcaagagagaaggaagtaggatgatatgttttgatttctcaaaaatgatgcacgtttacatg 28437224  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 152 - 195
Target Start/End: Complemental strand, 26654581 - 26654538
Alignment:
Q  152 caaactaaagaaataaagagagaagaaagtaggatgatatattt 195  Q
    |||||||| ||||| |||||||||| ||||||||||||||||||    
T  26654581 caaactaaggaaatcaagagagaaggaagtaggatgatatattt 26654538  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 152 - 207
Target Start/End: Original strand, 35552467 - 35552522
Alignment:
Q  152 caaactaaagaaataaagagagaagaaagtaggatgatatatttatatttctcaaa 207  Q
    |||||||| ||||| |||||||||| ||||| |||||||| ||| |||||||||||    
T  35552467 caaactaaggaaatcaagagagaaggaagtatgatgatatgtttttatttctcaaa 35552522  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 152 - 195
Target Start/End: Original strand, 35966592 - 35966635
Alignment:
Q  152 caaactaaagaaataaagagagaagaaagtaggatgatatattt 195  Q
    ||||||||  ||||||||||||||| ||||||||||||||||||    
T  35966592 caaactaagaaaataaagagagaaggaagtaggatgatatattt 35966635  T

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