View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14046_high_27 (Length: 215)

Name: NF14046_high_27
Description: NF14046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14046_high_27
NF14046_high_27
[»] chr2 (2 HSPs)
chr2 (24-203)||(26661413-26661592)
chr2 (23-108)||(6049912-6049998)
[»] chr6 (2 HSPs)
chr6 (24-203)||(21481331-21481510)
chr6 (24-106)||(19701161-19701244)
[»] chr7 (2 HSPs)
chr7 (25-182)||(13331572-13331727)
chr7 (25-182)||(13342487-13342642)
[»] chr5 (1 HSPs)
chr5 (25-182)||(5672043-5672198)
[»] chr8 (2 HSPs)
chr8 (24-137)||(10637619-10637732)
chr8 (24-137)||(32717862-32717975)
[»] chr3 (1 HSPs)
chr3 (24-165)||(15762013-15762154)
[»] chr1 (2 HSPs)
chr1 (24-137)||(22893774-22893887)
chr1 (26-108)||(44306129-44306212)
[»] scaffold0586 (1 HSPs)
scaffold0586 (24-106)||(9594-9677)


Alignment Details
Target: chr2 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 24 - 203
Target Start/End: Complemental strand, 26661592 - 26661413
Alignment:
Q  24 gaaattagatgataccttgaacagaagagtgaaatcaaaaacccaattggcaagtagttgatgcacacacaaagatcatgggtttctttttatacagaat 123  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  26661592 gaaattagatgataccttgaacagaagagtgaaatcaaaaacccaattggcaagcagttgatgcacacacaaagatcatgggtttctttttatacagaat 26661493  T
Q  124 atcatgggtgaaaatgtttagctggaatcatagaaaaagaatagcgggaatggcaagggtagaagaggtatattcttgga 203  Q
    |||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| || |||||    
T  26661492 atcatgggtgaaaatgtttagcgggaatcagagaaaaagaatagcgggaatggcaagggtagaagaggtattttgttgga 26661413  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 23 - 108
Target Start/End: Complemental strand, 6049998 - 6049912
Alignment:
Q  23 agaaattagatgataccttgaacagaagagtgaaatcaaaaacccaattggcaagtagttgatgcaca-cacaaagatcatgggttt 108  Q
    ||||||| |||| ||||||||| |||||||||||||| | |||| || | ||||| |||||||| ||| ||||||||| ||||||||    
T  6049998 agaaatttgatggtaccttgaagagaagagtgaaatccagaaccaaaatagcaagcagttgatgaacaccacaaagatgatgggttt 6049912  T

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Target: chr6 (Bit Score: 152; Significance: 1e-80; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 24 - 203
Target Start/End: Complemental strand, 21481510 - 21481331
Alignment:
Q  24 gaaattagatgataccttgaacagaagagtgaaatcaaaaacccaattggcaagtagttgatgcacacacaaagatcatgggtttctttttatacagaat 123  Q
    ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21481510 gaaattagatgttaccttgaatagaagagtgaaatcaaaaacccaattggcaagtagttgatgcacacacaaagatcatgggtttctttttatacagaat 21481411  T
Q  124 atcatgggtgaaaatgtttagctggaatcatagaaaaagaatagcgggaatggcaagggtagaagaggtatattcttgga 203  Q
    |||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||||||||| || |||||    
T  21481410 atcatgggtgaaaatgtttagcgggaatcagagaaaaagaatagcaggaatggcaagggtagaagaggtattttgttgga 21481331  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 24 - 106
Target Start/End: Complemental strand, 19701244 - 19701161
Alignment:
Q  24 gaaattagatgataccttgaacagaagagtgaaatcaaaaacccaattggcaagtagttgatgcacac-acaaagatcatgggt 106  Q
    ||||||||||| ||||||||| |||| ||||||||| ||||| ||| | ||||| |||||||| |||| |||||||||||||||    
T  19701244 gaaattagatggtaccttgaagagaaaagtgaaatccaaaactcaaatagcaagcagttgatgaacactacaaagatcatgggt 19701161  T

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Target: chr7 (Bit Score: 87; Significance: 7e-42; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 25 - 182
Target Start/End: Original strand, 13331572 - 13331727
Alignment:
Q  25 aaattagatgataccttgaacagaagagtgaaatcaaaaacccaattggcaagtagttgatgcacacacaaagatcatgggtttctttttatacagaata 124  Q
    |||||||||| ||||||||| |||||||||||||||||||| ||||  ||||| |||||||| ||||||||||||||||||||   ||||||| |||| |    
T  13331572 aaattagatggtaccttgaagagaagagtgaaatcaaaaactcaatcagcaagcagttgatgaacacacaaagatcatgggttatcttttatatagaaaa 13331671  T
Q  125 tcatgggtgaaaatgtttagctggaatcatagaaaaagaatagcgggaatggcaaggg 182  Q
     |||||||||||||||||||| ||||||  ||| ||||||||||||||||||||||||    
T  13331672 acatgggtgaaaatgtttagcgggaatc--agagaaagaatagcgggaatggcaaggg 13331727  T

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Target: chr7; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 25 - 182
Target Start/End: Original strand, 13342487 - 13342642
Alignment:
Q  25 aaattagatgataccttgaacagaagagtgaaatcaaaaacccaattggcaagtagttgatgcacacacaaagatcatgggtttctttttatacagaata 124  Q
    |||||||||| ||||||||| |||||||||||||||||||| ||||  ||||| |||||||| ||||||||||||||||||||   ||||||| |||| |    
T  13342487 aaattagatggtaccttgaagagaagagtgaaatcaaaaactcaatcagcaagcagttgatgaacacacaaagatcatgggttatcttttatatagaaaa 13342586  T
Q  125 tcatgggtgaaaatgtttagctggaatcatagaaaaagaatagcgggaatggcaaggg 182  Q
     |||||||||||||||||||| ||||||  ||| ||||||||||||||||| ||||||    
T  13342587 acatgggtgaaaatgtttagcgggaatc--agagaaagaatagcgggaatgacaaggg 13342642  T

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Target: chr5 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 25 - 182
Target Start/End: Original strand, 5672043 - 5672198
Alignment:
Q  25 aaattagatgataccttgaacagaagagtgaaatcaaaaacccaattggcaagtagttgatgcacacacaaagatcatgggtttctttttatacagaata 124  Q
    |||||||||| ||||||||| |||||||||||||||||||| ||||  ||||| |||||||| ||||||||||||||||||||   ||||||| |||| |    
T  5672043 aaattagatggtaccttgaagagaagagtgaaatcaaaaactcaatcagcaagcagttgatgaacacacaaagatcatgggttatcttttatatagaaaa 5672142  T
Q  125 tcatgggtgaaaatgtttagctggaatcatagaaaaagaatagcgggaatggcaaggg 182  Q
     |||||||||||||||||||| ||||||  ||| ||||||||||||||||| ||||||    
T  5672143 acatgggtgaaaatgtttagcgggaatc--agagaaagaatagcgggaatgacaaggg 5672198  T

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Target: chr8 (Bit Score: 55; Significance: 9e-23; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 24 - 137
Target Start/End: Complemental strand, 10637732 - 10637619
Alignment:
Q  24 gaaattagatgataccttgaacagaagagtgaaatcaaaaacccaattggcaagtagttgatgcacac-acaaagatcatgggtttctttttatacagaa 122  Q
    ||||||||||||||||||||| |||||||||||||| ||||| |||   ||||| |||||||| |||| |||||||| |||||||||||||| || ||||    
T  10637732 gaaattagatgataccttgaagagaagagtgaaatccaaaactcaaacagcaagcagttgatgaacactacaaagataatgggtttcttttt-tatagaa 10637634  T
Q  123 tatcatgggtgaaaa 137  Q
     ||||||||||||||    
T  10637633 gatcatgggtgaaaa 10637619  T

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Target: chr8; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 24 - 137
Target Start/End: Original strand, 32717862 - 32717975
Alignment:
Q  24 gaaattagatgataccttgaacagaagagtgaaatcaaaaacccaattggcaagtagttgatgcacac-acaaagatcatgggtttctttttatacagaa 122  Q
    ||||||||||| ||||||||| |||||||||||||| ||||| |||   ||||| |||||||| |||| |||||||| |||||||||||||| || ||||    
T  32717862 gaaattagatggtaccttgaagagaagagtgaaatccaaaactcaaacagcaagcagttgatgaacactacaaagataatgggtttcttttt-tatagaa 32717960  T
Q  123 tatcatgggtgaaaa 137  Q
     ||||||||||||||    
T  32717961 gatcatgggtgaaaa 32717975  T

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Target: chr3 (Bit Score: 54; Significance: 3e-22; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 24 - 165
Target Start/End: Original strand, 15762013 - 15762154
Alignment:
Q  24 gaaattagatgataccttgaacagaagagtgaaatcaaaaacccaattggcaagtagttgatgcacacacaaagatcatgggtttctttttatacagaat 123  Q
    ||||||||||| ||| ||||| |||| ||||||||||||| || |||| |||| ||||||||| ||| |||||||||||  | |  |||||||| ||||     
T  15762013 gaaattagatggtactttgaaaagaatagtgaaatcaaaacccaaattagcaaatagttgatgaacatacaaagatcatatgatgttttttatatagaag 15762112  T
Q  124 atcatgggtgaaaatgtttagctggaatcatagaaaaagaat 165  Q
    | |||| ||||||||||||||  ||||||| |||||||||||    
T  15762113 aacatgagtgaaaatgtttagtgggaatcagagaaaaagaat 15762154  T

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Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 24 - 137
Target Start/End: Complemental strand, 22893887 - 22893774
Alignment:
Q  24 gaaattagatgataccttgaacagaagagtgaaatcaaaaacccaattggcaagtagttgatgcacac-acaaagatcatgggtttctttttatacagaa 122  Q
    ||||||||||| ||||||||| |||||||||||||| ||||| |||   ||||| |||||||| |||| |||||||||||||||||| |||| || ||||    
T  22893887 gaaattagatgttaccttgaagagaagagtgaaatccaaaactcaaacagcaagcagttgatgaacactacaaagatcatgggtttcctttt-tatagaa 22893789  T
Q  123 tatcatgggtgaaaa 137  Q
     ||||||||||||||    
T  22893788 gatcatgggtgaaaa 22893774  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 108
Target Start/End: Complemental strand, 44306212 - 44306129
Alignment:
Q  26 aattagatgataccttgaacagaagagtgaaatcaaaaacccaattggcaagtagttgatgcaca-cacaaagatcatgggttt 108  Q
    |||| |||| ||||||||| |||||||||||||| | |||| || | ||||| |||||||| ||| ||||||||| ||||||||    
T  44306212 aatttgatggtaccttgaagagaagagtgaaatccagaaccaaaatagcaagcagttgatgaacaccacaaagatgatgggttt 44306129  T

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Target: scaffold0586 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 106
Target Start/End: Complemental strand, 9677 - 9594
Alignment:
Q  24 gaaattagatgataccttgaacagaagagtgaaatcaaaaacccaattggcaagtagttgatgcacac-acaaagatcatgggt 106  Q
    ||||||||||| ||||||||| |||||||||||||| ||||| |||    |||| |||||||| |||| |||||||||||||||    
T  9677 gaaattagatggtaccttgaagagaagagtgaaatccaaaactcaaacaacaagcagttgatgaacactacaaagatcatgggt 9594  T

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