View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14046_high_8 (Length: 426)
Name: NF14046_high_8
Description: NF14046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14046_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 18 - 412
Target Start/End: Original strand, 45128624 - 45129011
Alignment:
| Q |
18 |
acaacaaaacaatctaagtgaattagctaaacttgaaagctaacacgtgttgatgtcgatgtctaacatcgacagacacaagtgattacattcaattctg |
117 |
Q |
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| T |
45128624 |
acaacaaaacaatctaagtgaattagctaaacttgaaagctaacacgtgttgatgtcgatgtctaacatcaacagacacaagtgattacattcaattctg |
45128723 |
T |
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| Q |
118 |
tcaaattattattgttggtatcgacgtgtgtcgttgtttgtcgtgttagtgcttcaaattccagtagtgaagtgatggaaaagcatgagaagagagaggg |
217 |
Q |
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| T |
45128724 |
tcaaattatta---ttggtatcgacgtgtgtc----attgtcgtgttagcgcttcaaattccagaagtgaagtgatggaaaagcatgagaagagagaggg |
45128816 |
T |
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| Q |
218 |
tacaagagaagacactcacttgaggttgaggagaaataaccttggattgtgacagcacagaggaaatgcaaacatcaagagtgacatcatatttgtccac |
317 |
Q |
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| T |
45128817 |
tacaagagaagacactcacttgaggttgaggagaaataaccttggattgtgacagcacagaggaaatgcaaacatcaagagtgacatcatatttgtccac |
45128916 |
T |
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| Q |
318 |
aaatctactagtttctttactcaccaatcccataacctttgaacaaagaggtgaaactgagtctctattgtactcacttacataacgagaataat |
412 |
Q |
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| T |
45128917 |
aaatctactagtttctttactcaccaatcccataacctttgaacaaagaggtgaaactgagtctctattgtactcacttacataacgagagtaat |
45129011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 243 - 401
Target Start/End: Original strand, 40280697 - 40280855
Alignment:
| Q |
243 |
ttgaggagaaataaccttggattgtgacagcacagaggaaatgcaaacatcaagagtgacatcatatttgtccacaaatctactagtttctttactcacc |
342 |
Q |
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| T |
40280697 |
ttgaggacaaataactttggattgtgaaagcactgaggaaatgcatacatcaagggtaacatcatatttgtccacaaacttgctggtttctctgcttact |
40280796 |
T |
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| Q |
343 |
aatcccataacctttgaacaaagaggtgaaactgagtctctattgtactcacttacata |
401 |
Q |
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| T |
40280797 |
tggctcatgacctttgaacaaagcagggaaatggagtttctatagtactcacttacata |
40280855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 273 - 338
Target Start/End: Original strand, 6632101 - 6632166
Alignment:
| Q |
273 |
cacagaggaaatgcaaacatcaagagtgacatcatatttgtccacaaatctactagtttctttact |
338 |
Q |
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| T |
6632101 |
cacagaagatatacaaacatcaagagtgacatcatacttgtcaacaaatctgcttgtttctgtact |
6632166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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