View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14046_low_10 (Length: 383)
Name: NF14046_low_10
Description: NF14046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14046_low_10 |
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| [»] scaffold0060 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 271; Significance: 1e-151; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 3 - 367
Target Start/End: Original strand, 8434415 - 8434787
Alignment:
| Q |
3 |
ccatcccaacccttcatgtgtgttagaagaagaagcatgaaattgatccacattaacatagactccagaaattaagagtacaagaagttataaagaacaa |
102 |
Q |
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| T |
8434415 |
ccatcccaacccttcatgtgtgtgagaagaagaagcatgaaattgatccacgttaacatagactccagaaattaagagtacaagaagttataaagaacaa |
8434514 |
T |
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| Q |
103 |
cagattacaaatt-------taaaaaatttcaaatttgtatatcgatcgccctgtataagttctcaaccccaacacacacaaaa-atagcccataggtca |
194 |
Q |
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| T |
8434515 |
cagattacaaattacaaatttaaaaaatttcaaatttgtatatcgatcgccctgtataagttctcaaccccaacacacaaaaaaaatagcccataggtca |
8434614 |
T |
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| Q |
195 |
gtagtaaacaaagctggaggaaagttgcttatcaactcaacatcgaatcattgttgcactgattggatgtcatacgatggttatataactcacttactct |
294 |
Q |
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| T |
8434615 |
gtagtaaacaaagctggaggatagttgcttatcaactcaacatcgaatcattgttgcactgattggatgtcatacgatggttttataactcacttactct |
8434714 |
T |
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| Q |
295 |
ctacatttcattaaagttttccgatgtgggacttaatgatgtttcctgcagctcaaaccttgactatactagt |
367 |
Q |
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| T |
8434715 |
ctacatttcattaaaattttccgatgtgatgttttctttcctgtcctgcagctcaaaccttgactatactagt |
8434787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 70 - 169
Target Start/End: Original strand, 8431525 - 8431631
Alignment:
| Q |
70 |
gaaattaagagtacaagaagttataaagaacaacaga-------ttacaaatttaaaaaatttcaaatttgtatatcgatcgccctgtataagttctcaa |
162 |
Q |
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| T |
8431525 |
gaaattaggagtacaagaagttatagagagcaacagaatgcagattacaaatttaaaaaatttcaaatttgtatgtcagtcaccgcctataagttctcaa |
8431624 |
T |
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| Q |
163 |
ccccaac |
169 |
Q |
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| T |
8431625 |
ccccaac |
8431631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 253 - 329
Target Start/End: Original strand, 8431695 - 8431771
Alignment:
| Q |
253 |
ctgattggatgtcatacgatggttatataactcacttactctctacatttcattaaagttttccgatgtgggactta |
329 |
Q |
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| T |
8431695 |
ctgaatggatgccataggttggttttataactcacttactctctacgtttcagtaaagtttttcgatgtgagactta |
8431771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0060 (Bit Score: 171; Significance: 1e-91; HSPs: 2)
Name: scaffold0060
Description:
Target: scaffold0060; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 70 - 338
Target Start/End: Complemental strand, 75953 - 75677
Alignment:
| Q |
70 |
gaaattaagagtacaagaagttataaagaacaac-agattacaaatt-------taaaaaatttcaaatttgtatatcgatcgccctgtataagttctca |
161 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| || || ||||||||||||||||||||| |
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| T |
75953 |
gaaattaagagtacaagaagttataaagaacaaccagattacaaattacgaatttaaaaaatttcaaatttgcatctcaatcgccctgtataagttctca |
75854 |
T |
|
| Q |
162 |
accccaacacacacaaaaatagcccataggtcagtagtaaacaaagctggaggaaagttgcttatcaactcaacatcgaatcattgttgcactgattgga |
261 |
Q |
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|||||||| |||| |||||||| ||||||||| || |||||||||||| ||||| |||||| |||||||||||||||||||||||||| ||||||| || |
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| T |
75853 |
accccaactcacaaaaaaatagaccataggtcggtcgtaaacaaagctagaggatagttgcctatcaactcaacatcgaatcattgttacactgatcaga |
75754 |
T |
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| Q |
262 |
tgtcatacgatggttatataactcacttactctctacatttcattaaagttttccgatgtgggacttaatgatgttt |
338 |
Q |
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| T |
75753 |
tgtcatacgatggttttataactaacttactcgctacatttcattaaagtttttcgatgtgggacttaatgatgttt |
75677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0060; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 76071 - 76023
Alignment:
| Q |
13 |
ccttcatgtgtgttagaagaagaagcatgaaattgatccacattaacat |
61 |
Q |
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| T |
76071 |
ccttcatgtgtgtgggaagaagaagcatgaaattgatccacattaacat |
76023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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