View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14046_low_11 (Length: 370)
Name: NF14046_low_11
Description: NF14046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14046_low_11 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 173; Significance: 6e-93; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 33 - 209
Target Start/End: Complemental strand, 3653409 - 3653233
Alignment:
| Q |
33 |
aaatatgatcgtttttcatgattgaaagaaaaattctcgggattaaacttaatttcgggcattaaaaatcaaacactaattttgggcattaaaaatcaca |
132 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
3653409 |
aaatatgatcgtttttcatgattgaaagaaaaattctcgggattaaacttaatttcgggcattaaaaatcagacactaattttgggcattaaaaatcaca |
3653310 |
T |
|
| Q |
133 |
cacgctttgccttaatttccccttcagatagtagttttgttcttttattgacaacaaattagcttgataattaacat |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3653309 |
cacgctttgccttaatttccccttcagatagtagttttgttcttttattgacaacaaattagcttgataattaacat |
3653233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 208 - 352
Target Start/End: Original strand, 33811290 - 33811434
Alignment:
| Q |
208 |
attgttggtttccagccacaatagtaacaataatgcatcaattggaaatgttgaatttttctccactagcatgcctatgaataatagcttgcggtggtaa |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33811290 |
attgttggtttccagccacaatagtaacaataatgcatcaatgggaaatgttgaatttttctccactagcatgcctatgaataatagcttgcggtggtaa |
33811389 |
T |
|
| Q |
308 |
aaattctaccatgtcagcaacaaattgacaaacttggcaattggt |
352 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
33811390 |
aaattctaccatgtcagtaacaaattgacaaacttggcaattggt |
33811434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 208 - 352
Target Start/End: Original strand, 33816208 - 33816352
Alignment:
| Q |
208 |
attgttggtttccagccacaatagtaacaataatgcatcaattggaaatgttgaatttttctccactagcatgcctatgaataatagcttgcggtggtaa |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33816208 |
attgttggtttccagccacaatagtaacaataatgcatcaatgggaaatgttgaatttttctccactagcatgcctatgaataatagcttgcggtggtaa |
33816307 |
T |
|
| Q |
308 |
aaattctaccatgtcagcaacaaattgacaaacttggcaattggt |
352 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
33816308 |
aaattctaccatgtcagtaacaaattgacaaacttggcaattggt |
33816352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 210 - 348
Target Start/End: Original strand, 33807638 - 33807776
Alignment:
| Q |
210 |
tgttggtttccagccacaatagtaacaataatgcatcaattggaaatgttgaatttttctccactagcatgcctatgaataatagcttgcggtggtaaaa |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33807638 |
tgttggtttccagccacaatagtaacaataatgcatcaatgggaaatgttgaatttttctccactagcatgcctatgaataatagcttgcggtggtaaaa |
33807737 |
T |
|
| Q |
310 |
attctaccatgtcagcaacaaattgacaaacttggcaat |
348 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
33807738 |
attctaccatgtcagtaacaaattgacaaacttggcaat |
33807776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 13 - 48
Target Start/End: Complemental strand, 3653465 - 3653430
Alignment:
| Q |
13 |
cattaatttcttatgatacgaaatatgatcgttttt |
48 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| |
|
|
| T |
3653465 |
cattaatttcttatgttacgaaatatgatcgttttt |
3653430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University