View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14046_low_18 (Length: 288)
Name: NF14046_low_18
Description: NF14046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14046_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 13 - 274
Target Start/End: Original strand, 397656 - 397922
Alignment:
| Q |
13 |
aatatacaatagaacatctagtctacattatttaaaggggtatgagtagtttatatcgagtaaataatatattgaacatttttatctatccaatataaaa |
112 |
Q |
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| T |
397656 |
aatagacaatagaacatctagtcttcattatttaaaggggtatgagtagtttatatcgagtaaataatatattgaacatttttatctatccaatataaaa |
397755 |
T |
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| Q |
113 |
cttat------gttaaacctttttgttggctttatttatctatcaacatttgacggtgaaccttgatctaacctataaattgtcctttatgtaaacaaat |
206 |
Q |
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| T |
397756 |
cttataacattgccacacctttttgttggcttcatttatctatcaacatttgatggtgagccttgatctaacctataaattatcctttatgtaaccgaat |
397855 |
T |
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| Q |
207 |
tgtcattgaaagtactaattgttaggacttaaccacaagaagtgtgtgactcagaagattaattcatt |
274 |
Q |
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| T |
397856 |
tgtcattgaaagtattaattgttaggacttaatcacaa-aagtgtgagactcaaaagattaattcatt |
397922 |
T |
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