View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14046_low_19 (Length: 286)
Name: NF14046_low_19
Description: NF14046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14046_low_19 |
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Alignment Details
Target: chr6 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 7399235 - 7399455
Alignment:
| Q |
1 |
cataaatcgcgagaccataaactaatttcaacatatatggtgcaaccattataagaaaggagtttctcatctcgccctacttgcttctagcgcgtcctac |
100 |
Q |
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| T |
7399235 |
cataaatcgcgagaccataaactaatttcaacatatatggtgcaaccattataagaaaggagtttctcatctcgccctacttgcttctagcgcgtcctac |
7399334 |
T |
|
| Q |
101 |
agcattttagattgtatattccaaaaggtgtaaaaatgttgaaaaatccctccataaagcctttattttttggattttaaaatccgaaatagggcgcacg |
200 |
Q |
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| T |
7399335 |
aacattttagattgtatattccaaaaggtctaaaaatgttgaaaaatccctccataaagcctttattttttggattttaaaatccgaaatagggcgcaca |
7399434 |
T |
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| Q |
201 |
ataagcttagtatagattagt |
221 |
Q |
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||||||||||||||||||||| |
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| T |
7399435 |
ataagcttagtatagattagt |
7399455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 219 - 273
Target Start/End: Original strand, 7410984 - 7411035
Alignment:
| Q |
219 |
agtacctgacgcgaaggttcggcggttctcttacggctattgatatcataatttg |
273 |
Q |
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| T |
7410984 |
agtacctgacgcgaaggttcgg---ttctcttacggctattgatatcataatttg |
7411035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 95 - 194
Target Start/End: Complemental strand, 32432932 - 32432834
Alignment:
| Q |
95 |
tcctacagcattttagattgtatattccaaaaggtgtaaaaatgttgaaaaatccctccataaagcctttattttttggattttaaaatccgaaataggg |
194 |
Q |
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| T |
32432932 |
tcctacaacatttcggattatataatacaaaaggtgtaaaaacgttcaggaatcc-tccataaaccatccatttttcggattttaaaatccgaaataggg |
32432834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 94 - 194
Target Start/End: Complemental strand, 25790330 - 25790231
Alignment:
| Q |
94 |
gtcctacagcattttagattgtatattccaaaaggtgtaaaaatgttgaaaaatccctccataaagcctttattttttggattttaaaatccgaaatagg |
193 |
Q |
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|||||||| ||||||||||| |||| || ||||||||||||||||| ||||| ||||||||||| ||| ||||||||||| |||||||| ||||||| |
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| T |
25790330 |
gtcctacaacattttagattatataatctgaaaggtgtaaaaatgttcaaaaa-ccctccataaaccctccattttttggatattaaaatctaaaatagg |
25790232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 136
Target Start/End: Original strand, 17648490 - 17648531
Alignment:
| Q |
95 |
tcctacagcattttagattgtatattccaaaaggtgtaaaaa |
136 |
Q |
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||||||| ||||||||||| |||| ||||||||||||||||| |
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| T |
17648490 |
tcctacaacattttagattatataatccaaaaggtgtaaaaa |
17648531 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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