View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14046_low_2 (Length: 738)
Name: NF14046_low_2
Description: NF14046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14046_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 495; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 18 - 643
Target Start/End: Original strand, 3840038 - 3840654
Alignment:
| Q |
18 |
aaccataaccaaattccatcaccgagacccataacaagatccgaaccaggtaacccatatccaacaacatttgttcaagctgacacaacctcgttcaaac |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3840038 |
aaccataaccaaattccatcaccgagacccataacaagatccgaaccaggtaacccatatccaacaacatttgttcaagctgacacaacctcgttcaaac |
3840137 |
T |
|
| Q |
118 |
aagttgttcaaatgttaactggttcctcggagacagcaaaacaagcttcaacttcaacaaaaccaaaccataaccataaccataacattcctccnnnnnn |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |
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| T |
3840138 |
aagttgttcaaatgttaactggttcctcggagacagcaaaacaagcttcaacttcaacaaaagcaaaccataaccataac------attcctccaaaaaa |
3840231 |
T |
|
| Q |
218 |
ncaacaaggtttcaaactctatgaaagaagaaactcatttcacaaaaaccttaacattaaccctttattaccacccattttccccaactcaactttctca |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |
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| T |
3840232 |
acaacaaggtttcaaactctatgaaagaagaaactcatttcacaaaaaccttaacattaaccctttattaccacccattttctcaaactcaactttctca |
3840331 |
T |
|
| Q |
318 |
cctcgtaacaaacaagagatcttgtcacctagtatcctagattttccttctcttgttcttagcccggttacaccacttatacccgacccatttaaccgat |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3840332 |
cctcgtaacaaacaagagatcttgtcacctagtatcctagattttccttctcttgttcttagcccggttacaccacttatacccgacccatttaaccgat |
3840431 |
T |
|
| Q |
418 |
ccggnnnnnnnnnnnnnnnnnnnnnngctgctagaaatgtttcttctttggattctttagctgaagataaagctataagagaaaagggtttctttctgca |
517 |
Q |
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|||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3840432 |
ccgg---ttcttcttcttcttcttctgctgctagaaatggttcttctttggattctttagctgaagataaagctataagagaaaagggtttctttctgca |
3840528 |
T |
|
| Q |
518 |
tccttctcctagagctgcttcaacttctagagactctgaacctcgtttgcttcctctttttcctacttcttctcctagggcttcaggtccttcatcttct |
617 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3840529 |
tccttctcctagagctgcttcaacttctagagactctgaacctcgtttgcttcctctttttcctacttcttctcctagggcttcaggtccttcatcttct |
3840628 |
T |
|
| Q |
618 |
tcaaaatattctgcatcttgaacctt |
643 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
3840629 |
tcaaaatattctgcatcttgaacctt |
3840654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 75 - 142
Target Start/End: Complemental strand, 33154890 - 33154823
Alignment:
| Q |
75 |
tatccaacaacatttgttcaagctgacacaacctcgttcaaacaagttgttcaaatgttaactggttc |
142 |
Q |
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||||||||||| ||||||||||||||||||||| | ||||||||||| |||||||||||||||||||| |
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| T |
33154890 |
tatccaacaacctttgttcaagctgacacaaccactttcaaacaagtagttcaaatgttaactggttc |
33154823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 5e-24; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 54 - 139
Target Start/End: Complemental strand, 35302937 - 35302852
Alignment:
| Q |
54 |
agatccgaaccaggtaacccatatccaacaacatttgttcaagctgacacaacctcgttcaaacaagttgttcaaatgttaactgg |
139 |
Q |
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||||||||||| ||||||||||| || ||||||||||||||||||||| || | || ||||||||||||||||||||||||||||| |
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| T |
35302937 |
agatccgaaccgggtaacccatacccgacaacatttgttcaagctgacccatcttcattcaaacaagttgttcaaatgttaactgg |
35302852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 340 - 413
Target Start/End: Complemental strand, 35302648 - 35302575
Alignment:
| Q |
340 |
tgtcacctagtatcctagattttccttctcttgttcttagcccggttacaccacttatacccgacccatttaac |
413 |
Q |
| |
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|||| ||||||||||||||||||||| | |||||||||||||| |||||||| |||||||| ||||| |||||| |
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| T |
35302648 |
tgtctcctagtatcctagattttcctgcgcttgttcttagccctgttacacctcttataccggacccttttaac |
35302575 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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