View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14046_low_20 (Length: 284)

Name: NF14046_low_20
Description: NF14046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14046_low_20
NF14046_low_20
[»] chr1 (1 HSPs)
chr1 (1-284)||(48421418-48421701)


Alignment Details
Target: chr1 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 48421701 - 48421418
Alignment:
Q  1 gaaaccaatatcaaatgtcaaatatgaagaagtataaaccaaaccatactccaagtagaaaattcccaaagacacaacaaattacgaatgaacacattag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48421701 gaaaccaatatcaaatgtcaaatatgaagaagtataaaccaaaccatactccaagtagaaaattcccaaagacacaacaaattacgaatgaacacattag 48421602  T
Q  101 aagtaactctagtcctctgctatatttttctctggcacatagtacattatcttaagagagaagttcgcatagatgctactacatttagaagagttcttta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48421601 aagtaactctagtcctctgctatatttttctctggcacatagtacattatcttaagagagaagttcgcatagatgctactacatttagaagagttcttta 48421502  T
Q  201 cctcttatgcatacactagagaacgtcctccatgtaacaaatttattgtgcacactctacataattctaatccaaaaataggaa 284  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48421501 cctcttatgcatacactagagaacgtccttcatgtaacaaatttattgtgcacactctacataattctaatccaaaaataggaa 48421418  T

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