View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14046_low_22 (Length: 266)
Name: NF14046_low_22
Description: NF14046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14046_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 18 - 260
Target Start/End: Complemental strand, 2801696 - 2801454
Alignment:
| Q |
18 |
acataggaaatgtttaatctaaagacagttcttcagttgcacctgcactcctaattctgcagtaacagcagctgattagcgacatggaaagcaaacgaaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2801696 |
acataggaaatgtttaatctaaagacagttcttcagttgcacctgcactcctaattctgcagtaacagcagctgattagcgacatggaaagcaaacgaaa |
2801597 |
T |
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| Q |
118 |
tacgggtcgaacaagaaaatcctctagagggattgagacttaactttctgtttggtccattccatcacaagtcgagcttcatcatggttaatttcacgat |
217 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2801596 |
tacgggtagaacaagaaaatcctctagagggattgagacttaactttctgtttggtccattccatcacaagtcgagcttcatcatggttaatttagcgat |
2801497 |
T |
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| Q |
218 |
cactaacaagttcaacttccataatcattccatttcttctcac |
260 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2801496 |
cactaacaagttcaacttccataatcattccatttcttctcac |
2801454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 18 - 260
Target Start/End: Original strand, 1679032 - 1679274
Alignment:
| Q |
18 |
acataggaaatgtttaatctaaagacagttcttcagttgcacctgcactcctaattctgcagtaacagcagctgattagcgacatggaaagcaaacgaaa |
117 |
Q |
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|||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
1679032 |
acataggaaatgtttaatctgaagacaattcttcagttgcacctgcactcctaattctgcagtaacagcagctgattagcgacatggaaagcagacgaaa |
1679131 |
T |
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| Q |
118 |
tacgggtcgaacaagaaaatcctctagagggattgagacttaactttctgtttggtccattccatcacaagtcgagcttcatcatggttaatttcacgat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
1679132 |
tacgggtcgaacaagaaaatcctctagagggattgagacttaactttctgtttggtccattccatcacaagtcgagcttcatcatggttaattttgcgat |
1679231 |
T |
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| Q |
218 |
cactaacaagttcaacttccataatcattccatttcttctcac |
260 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1679232 |
cactaacaagttcaacttccataatcattccatttcttctcac |
1679274 |
T |
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