View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14046_low_28 (Length: 235)
Name: NF14046_low_28
Description: NF14046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14046_low_28 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 17 - 235
Target Start/End: Complemental strand, 11826883 - 11826665
Alignment:
| Q |
17 |
agatctcatcatcgaaagtgcttgcatcaacacgatggaagtaaagaagcgaaactaaaggcaaaatggttcatcttagacctaactactagttaggtca |
116 |
Q |
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| T |
11826883 |
agatctcatcatcgaaagtgtttgcatcaacacgatggaagtaaagaagcgaaactaaaggcaaaatggttcatcttagacctaactactagttaggtca |
11826784 |
T |
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| Q |
117 |
tagctgaaaaccctcaagatcttaacctatatggaagggcaactaatcatcctttggcaatttatgtatcgcatataaagatctcaaatatatagaatag |
216 |
Q |
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| T |
11826783 |
tagctgaaaaccctcaagatcttaacctatatggaagggcaactaattatcctttggcaatttatgtatcgcatataaagatctcaaatatatagaatag |
11826684 |
T |
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| Q |
217 |
ctactcgtgtgtacgcatt |
235 |
Q |
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| T |
11826683 |
ctactcgtgtgtatgcatt |
11826665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 50 - 202
Target Start/End: Complemental strand, 11840686 - 11840528
Alignment:
| Q |
50 |
gatggaagtaaagaagcgaaactaaaggcaaaatggttcatc---ttagacctaactactagttaggtcatagctgaaa---accctcaagatcttaacc |
143 |
Q |
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| T |
11840686 |
gatggaagcaaagaagcaaaattgaaggcaaaatagtgcttcaagttagacctagctacaagctaggtcatggttgaaagaaaccctcaagatcttaacc |
11840587 |
T |
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| Q |
144 |
tatatggaagggcaactaatcatcctttggcaatttatgtatcgcatataaagatctca |
202 |
Q |
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| T |
11840586 |
tataaggaagggcaaccaatgatcctttggcaatttatgtatcctatataaagatctca |
11840528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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