View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14046_low_3 (Length: 668)

Name: NF14046_low_3
Description: NF14046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14046_low_3
NF14046_low_3
[»] chr1 (20 HSPs)
chr1 (1-434)||(12611795-12612230)
chr1 (458-645)||(12611416-12611605)
chr1 (553-649)||(15884540-15884636)
chr1 (226-281)||(6617431-6617486)
chr1 (140-258)||(9828055-9828173)
chr1 (154-258)||(16164259-16164363)
chr1 (140-258)||(25361897-25362011)
chr1 (556-647)||(12638414-12638505)
chr1 (227-282)||(38078678-38078734)
chr1 (227-281)||(398782-398837)
chr1 (236-281)||(9103627-9103673)
chr1 (226-260)||(24701116-24701150)
chr1 (216-258)||(30847726-30847768)
chr1 (227-292)||(36878437-36878503)
chr1 (217-281)||(13997870-13997935)
chr1 (217-281)||(17831538-17831603)
chr1 (217-270)||(34257917-34257970)
chr1 (222-281)||(6427337-6427397)
chr1 (140-188)||(29144321-29144369)
chr1 (140-212)||(40917806-40917878)
[»] chr5 (10 HSPs)
chr5 (140-281)||(30098313-30098455)
chr5 (140-294)||(39698515-39698670)
chr5 (140-281)||(21522737-21522879)
chr5 (140-281)||(21533303-21533445)
chr5 (227-281)||(31084310-31084365)
chr5 (217-268)||(43208281-43208332)
chr5 (218-256)||(2703473-2703511)
chr5 (236-281)||(19552569-19552615)
chr5 (222-258)||(16881147-16881183)
chr5 (222-270)||(38749575-38749623)
[»] chr6 (20 HSPs)
chr6 (140-282)||(17302542-17302686)
chr6 (138-258)||(31384931-31385050)
chr6 (140-281)||(16766684-16766826)
chr6 (227-281)||(426531-426586)
chr6 (217-270)||(10842531-10842584)
chr6 (218-269)||(5462686-5462737)
chr6 (140-191)||(7625183-7625234)
chr6 (140-258)||(9107300-9107418)
chr6 (140-209)||(9658928-9658998)
chr6 (227-280)||(17341681-17341735)
chr6 (217-281)||(5732517-5732582)
chr6 (217-258)||(26314641-26314682)
chr6 (216-269)||(30537500-30537553)
chr6 (217-258)||(33001296-33001337)
chr6 (224-268)||(2493428-2493472)
chr6 (227-263)||(4118350-4118386)
chr6 (206-258)||(9024172-9024224)
chr6 (225-261)||(10335391-10335427)
chr6 (140-282)||(10339055-10339199)
chr6 (217-281)||(33468389-33468452)
[»] chr4 (15 HSPs)
chr4 (140-256)||(30982808-30982924)
chr4 (159-267)||(903924-904032)
chr4 (140-198)||(35161096-35161154)
chr4 (140-258)||(36635335-36635448)
chr4 (217-279)||(5775365-5775427)
chr4 (216-269)||(18513247-18513300)
chr4 (225-270)||(21732375-21732420)
chr4 (217-258)||(33950147-33950188)
chr4 (138-198)||(3947700-3947760)
chr4 (140-212)||(5414102-5414174)
chr4 (222-270)||(22440612-22440660)
chr4 (224-268)||(27096015-27096059)
chr4 (161-209)||(40481690-40481738)
chr4 (216-264)||(44081583-44081631)
chr4 (224-256)||(49345741-49345773)
[»] chr7 (13 HSPs)
chr7 (139-281)||(32308107-32308250)
chr7 (141-258)||(26033392-26033509)
chr7 (227-285)||(7438689-7438748)
chr7 (216-281)||(42720896-42720962)
chr7 (237-281)||(21828432-21828477)
chr7 (227-269)||(11700803-11700845)
chr7 (216-258)||(23948403-23948445)
chr7 (140-258)||(24339653-24339771)
chr7 (205-258)||(19930936-19930989)
chr7 (140-212)||(21930685-21930757)
chr7 (217-269)||(38134413-38134465)
chr7 (222-258)||(38143234-38143270)
chr7 (140-204)||(43027405-43027469)
[»] chr8 (11 HSPs)
chr8 (140-281)||(29510234-29510376)
chr8 (140-218)||(6065587-6065665)
chr8 (140-281)||(22651963-22652105)
chr8 (215-268)||(1586609-1586662)
chr8 (169-258)||(2572015-2572104)
chr8 (217-258)||(12985403-12985444)
chr8 (227-270)||(4298903-4298946)
chr8 (140-210)||(3951477-3951547)
chr8 (217-258)||(22493505-22493546)
chr8 (201-270)||(24362193-24362262)
chr8 (216-269)||(32691743-32691796)
[»] scaffold0652 (1 HSPs)
scaffold0652 (139-198)||(402-461)
[»] chr3 (12 HSPs)
chr3 (143-258)||(11665955-11666070)
chr3 (218-268)||(4201397-4201447)
chr3 (141-282)||(4987222-4987364)
chr3 (207-257)||(39002044-39002094)
chr3 (227-281)||(10268503-10268558)
chr3 (191-270)||(16192731-16192810)
chr3 (140-270)||(37077357-37077488)
chr3 (140-258)||(14209124-14209242)
chr3 (191-268)||(1550141-1550218)
chr3 (217-270)||(7928449-7928502)
chr3 (217-270)||(32804547-32804600)
chr3 (170-258)||(14832110-14832198)
[»] scaffold0059 (1 HSPs)
scaffold0059 (556-649)||(63545-63638)
[»] chr2 (12 HSPs)
chr2 (139-269)||(44860320-44860450)
chr2 (227-281)||(30404867-30404922)
chr2 (140-210)||(18840954-18841024)
chr2 (140-258)||(30717460-30717578)
chr2 (140-258)||(37419754-37419872)
chr2 (140-269)||(19959815-19959944)
chr2 (154-258)||(4207868-4207971)
chr2 (216-268)||(18570973-18571025)
chr2 (217-281)||(18889598-18889662)
chr2 (138-258)||(27286220-27286340)
chr2 (222-270)||(28677908-28677956)
chr2 (222-266)||(36281688-36281732)
[»] scaffold1300 (1 HSPs)
scaffold1300 (184-264)||(580-660)
[»] scaffold0123 (1 HSPs)
scaffold0123 (181-257)||(44496-44572)
[»] scaffold0246 (1 HSPs)
scaffold0246 (161-209)||(19629-19677)


Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-141; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 1 - 434
Target Start/End: Complemental strand, 12612230 - 12611795
Alignment:
Q  1 cttgtgctctcatactatctcttatggaggttgaaaacaattttatatnnnnnnnnnnntacactgtggagagaccatagtaagattatgctcttcttta 100  Q
    |||||||| ||||||| ||||||||||||||||||||||||||||||            |||||| ||||||||||||||||||||||||||||||||||    
T  12612230 cttgtgctatcatactctctcttatggaggttgaaaacaattttata----aaaaaaaatacactttggagagaccatagtaagattatgctcttcttta 12612135  T
Q  101 atctaatggtaaataatgaacttacccatattttttcattatgaagcacggatactctttggattaagtgtgttccggtatcggacacgcgtcgtgtcta 200  Q
    ||||||||| |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  12612134 atctaatggcaaataatgaacttacccatatttttctattatgaagcacggatactctttggattaagcatgttccggtatcggacacgcgtcgtgtcta 12612035  T
Q  201 acactgacacgatattgacatatatgattacattcaattatgtgattttttcaaattactaacggtgtc----gcgtgtcagtgtttatatccgtgctac 296  Q
    ||||  |||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||| |||||    |||||||||||| | ||| |||||| |    
T  12612034 acaccaacacgatactgacacatatgattacactcaattatgtgattttttcaaattactaacagtgtcagcggcgtgtcagtgtctgtattcgtgcttc 12611935  T
Q  297 ttagcttttccaccctaaatgcccccaaacatagacctattggcaattgccaatttgaaatactcttgagagtgcattgcctgatagaaaga--cnnnnn 394  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |||||            
T  12611934 ttagcttttccaccctaaatgcccccaaacatagacctattggcaattgccaatttgaaatactcttgagagtgcattccatgatataaagaacaaaaaa 12611835  T
Q  395 nnntctcaaagaaagtcgttgaaagcgtgaagcaaataaa 434  Q
       ||||||||||| |||||||||||||||||||||||||    
T  12611834 aaatctcaaagaaaatcgttgaaagcgtgaagcaaataaa 12611795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 458 - 645
Target Start/End: Complemental strand, 12611605 - 12611416
Alignment:
Q  458 aaattcaaaaccttgttgatagctagaactatactactcctttctagttggttaactccatggatttcaannnnnnn-gacttattagtcctttcctcct 556  Q
    ||||| |||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||        |||||| |||||||| | ||||    
T  12611605 aaatttaaaaccttgttgatagctagcactatactactcctttctagttggtcaactccatggatttcaaatttttttgacttaatagtccttgcatcct 12611506  T
Q  557 ttttcctcttcatacttgttgcactgaaaatagggaagaatctc-aaggaaaaaaggtcagctccaaagctaccaccaggtccatggaag 645  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||    
T  12611505 ttttcctcttcatacttgttgcactgaaaatagggaagaatctcaaaggaaaaaaggtcagctccaaagctaccaccaggaccatggaag 12611416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 553 - 649
Target Start/End: Original strand, 15884540 - 15884636
Alignment:
Q  553 tcctttttcctcttcatacttgttgcactgaaaatagggaagaatctcaaggaaaaaaggtcagctccaaagctaccaccaggtccatggaagctac 649  Q
    ||||||||||||||||| ||||| |||||||||||| |||||||||||||| ||||| | ||| ||||||| ||||| ||||| |||||||||||||    
T  15884540 tcctttttcctcttcatgcttgtagcactgaaaataaggaagaatctcaagaaaaaaggctcatctccaaacctacccccaggaccatggaagctac 15884636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 226 - 281
Target Start/End: Original strand, 6617431 - 6617486
Alignment:
Q  226 gattacattcaattatgtgattttttcaaattactaacggtgtcgcgtgtcagtgt 281  Q
    |||||||||||||||||| | ||||||||||||||| || ||||||||||||||||    
T  6617431 gattacattcaattatgtcaatttttcaaattactatcgctgtcgcgtgtcagtgt 6617486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 140 - 258
Target Start/End: Complemental strand, 9828173 - 9828055
Alignment:
Q  140 tatgaagcacggatactctttggattaagtgtgttccggtatcggacacgcgtcgtgtctaacactgacacgatattgacatatatgattacattcaatt 239  Q
    ||||||||||||| |||| | ||||||   |||| ||||| ||||||||| ||||||||| |||| ||||||| |  |||| |||  |||||| | ||||    
T  9828173 tatgaagcacggacactcctcggattagacgtgtcccggtgtcggacacgtgtcgtgtctgacacggacacgacaccgacacataaaattacactgaatt 9828074  T
Q  240 atgtgattttttcaaatta 258  Q
    |||||||||| ||||||||    
T  9828073 atgtgattttatcaaatta 9828055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 258
Target Start/End: Original strand, 16164259 - 16164363
Alignment:
Q  154 actctttggattaagtgtgttccggtatcggacacgcgtcgtgtctaacactgacacgatattgacatatatgattacattcaattatgtgattttttca 253  Q
    |||||| |||||| | |||| | ||| ||||||||| || | ||| |||||  |||||| | ||||| |||| |||||||| ||||||||||||||||||    
T  16164259 actcttcggattaggcgtgtcctggtgtcggacacgtgttgcgtccaacaccaacacgacaatgacacatataattacattaaattatgtgattttttca 16164358  T
Q  254 aatta 258  Q
    |||||    
T  16164359 aatta 16164363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 258
Target Start/End: Complemental strand, 25362011 - 25361897
Alignment:
Q  140 tatgaagcacggatactctttggattaagtgtgttccggtatcggacacgcgtcgtgtctaacactgacacgatattgacatatatgattacattcaatt 239  Q
    ||||||||||||| |||||| |||||| ||||  |||||| ||||||| |  |||||||  |||| ||||||| | ||||| |||| |||||| | ||||    
T  25362011 tatgaagcacggacactcttcggattaggtgt--tccggtgtcggacatg--tcgtgtccgacaccgacacgacactgacacatataattacactgaatt 25361916  T
Q  240 atgtgattttttcaaatta 258  Q
    |||||||||| ||||||||    
T  25361915 atgtgattttctcaaatta 25361897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 556 - 647
Target Start/End: Complemental strand, 12638505 - 12638414
Alignment:
Q  556 tttttcctcttcatacttgttgcactgaaaatagggaagaatctcaaggaaaaaaggtcagctccaaagctaccaccaggtccatggaagct 647  Q
    |||||| ||||||| ||||| | ||| | || ||||| |||||| ||| ||||||| ||||||||||| ||||| ||||| |||||||||||    
T  12638505 tttttcatcttcatgcttgtggtacttacaaaagggaggaatcttaagaaaaaaagttcagctccaaatctacccccaggaccatggaagct 12638414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 227 - 282
Target Start/End: Original strand, 38078678 - 38078734
Alignment:
Q  227 attacattcaattatgtgattttttcaaattactaacggtgtcg-cgtgtcagtgtt 282  Q
    |||||||| ||||||||||||||||||||||| || | |||||| ||||||||||||    
T  38078678 attacattgaattatgtgattttttcaaattattagctgtgtcgacgtgtcagtgtt 38078734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 227 - 281
Target Start/End: Original strand, 398782 - 398837
Alignment:
Q  227 attacattcaattatgtgattttttcaaattactaacggtgtc-gcgtgtcagtgt 281  Q
    |||||| | ||||||||||||||||||||||| || ||||||| ||||||||||||    
T  398782 attacactgaattatgtgattttttcaaattattagcggtgtcggcgtgtcagtgt 398837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 236 - 281
Target Start/End: Complemental strand, 9103673 - 9103627
Alignment:
Q  236 aattatgtgattttttcaaattactaacggtgtc-gcgtgtcagtgt 281  Q
    ||||||||||||||||||||||| |||| ||||| ||||||||||||    
T  9103673 aattatgtgattttttcaaattattaactgtgtcggcgtgtcagtgt 9103627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 226 - 260
Target Start/End: Original strand, 24701116 - 24701150
Alignment:
Q  226 gattacattcaattatgtgattttttcaaattact 260  Q
    |||||||||||||||||| ||||||||||||||||    
T  24701116 gattacattcaattatgtcattttttcaaattact 24701150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 216 - 258
Target Start/End: Original strand, 30847726 - 30847768
Alignment:
Q  216 tgacatatatgattacattcaattatgtgattttttcaaatta 258  Q
    ||||| ||||||||||||| |||||||| ||||||||||||||    
T  30847726 tgacacatatgattacattgaattatgtcattttttcaaatta 30847768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 227 - 292
Target Start/End: Complemental strand, 36878503 - 36878437
Alignment:
Q  227 attacattcaattatgtgattttttcaaattactaacggtgtc-gcgtgtcagtgtttatatccgtg 292  Q
    |||||| | |||||||||||||| |||||||| || ||||||| |||||||||||| ||| ||||||    
T  36878503 attacactgaattatgtgattttctcaaattattagcggtgtcggcgtgtcagtgtctatgtccgtg 36878437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 217 - 281
Target Start/End: Complemental strand, 13997935 - 13997870
Alignment:
Q  217 gacatatatgattacattcaattatgtgattttttcaaattactaacggtgtc-gcgtgtcagtgt 281  Q
    |||| |||| |||||| | |||||||||||||||| |||| | |||||||||| ||||||||||||    
T  13997935 gacacatataattacactgaattatgtgatttttttaaataattaacggtgtcggcgtgtcagtgt 13997870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 217 - 281
Target Start/End: Original strand, 17831538 - 17831603
Alignment:
Q  217 gacatatatgattacattcaattatgtgattttttcaaattactaacggtgtc-gcgtgtcagtgt 281  Q
    |||| ||||||||||| | ||| |||||||||| |||||||| || ||||||| ||||||||||||    
T  17831538 gacacatatgattacactgaataatgtgattttctcaaattattagcggtgtcggcgtgtcagtgt 17831603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 217 - 270
Target Start/End: Original strand, 34257917 - 34257970
Alignment:
Q  217 gacatatatgattacattcaattatgtgattttttcaaattactaacggtgtcg 270  Q
    ||||||||| |||||| | |||||||||||||| | |||||| |||||||||||    
T  34257917 gacatatataattacactaaattatgtgattttattaaattattaacggtgtcg 34257970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 222 - 281
Target Start/End: Complemental strand, 6427397 - 6427337
Alignment:
Q  222 atatgattacattcaattatgtgattttttcaaattactaacggtg-tcgcgtgtcagtgt 281  Q
    |||| |||||||| |||||||||||||| |||||||| || ||||| | ||||||||||||    
T  6427397 atataattacattgaattatgtgattttctcaaattattagcggtgttggcgtgtcagtgt 6427337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 140 - 188
Target Start/End: Original strand, 29144321 - 29144369
Alignment:
Q  140 tatgaagcacggatactctttggattaagtgtgttccggtatcggacac 188  Q
    ||||||||||||| |||||| |||||| | |||||||||| ||||||||    
T  29144321 tatgaagcacggacactcttcggattaggcgtgttccggtgtcggacac 29144369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 140 - 212
Target Start/End: Complemental strand, 40917878 - 40917806
Alignment:
Q  140 tatgaagcacggatactctttggattaagtgtgttccggtatcggacacgcgtcgtgtctaacactgacacga 212  Q
    ||||||||||||| | || | |||||| | |||| ||||| ||||||||| |||||||| ||||| |||||||    
T  40917878 tatgaagcacggacagtcctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtccaacaccgacacga 40917806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 7e-20; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 140 - 281
Target Start/End: Complemental strand, 30098455 - 30098313
Alignment:
Q  140 tatgaagcacggatactctttggattaagtgtgttccggtatcggacacgcgtcgtgtctaacactgacacgatattgacatatatgattacattcaatt 239  Q
    ||||||||||||| | || | |||||| |||||| | ||| || |||||| ||||||||  |||||||| |||||  ||||| ||| |||||||| ||||    
T  30098455 tatgaagcacggacattcctcggattaggtgtgtcctggtgtctgacacgtgtcgtgtccgacactgactcgataccgacatctataattacattgaatt 30098356  T
Q  240 atgtgattttttcaaattactaacggtgtcg-cgtgtcagtgt 281  Q
    |||||||||| |||||||| ||||||| ||| |||||||||||    
T  30098355 atgtgattttctcaaattattaacggtttcgtcgtgtcagtgt 30098313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 140 - 294
Target Start/End: Complemental strand, 39698670 - 39698515
Alignment:
Q  140 tatgaagcacggatactctttggattaagtgtgttccggtatcggacacgcgtcgtgtctaacactgacacgatattgacatatatgattacattcaatt 239  Q
    ||||||||||||| |||| | |||||| | ||||  |||| ||||| ||  ||||||||  |||| ||||||| | |||||  | | |||||| | ||||    
T  39698670 tatgaagcacggacactcctcggattaggcgtgtctcggtgtcggatacatgtcgtgtccgacaccgacacgacactgacacttgtaattacactgaatt 39698571  T
Q  240 atgtgattttttcaaattactaacggtgtc-gcgtgtcagtgtttatatccgtgct 294  Q
    ||||||||||||||||||| || | ||||| ||||||||||||   ||||||||||    
T  39698570 atgtgattttttcaaattattagctgtgtcagcgtgtcagtgtccgtatccgtgct 39698515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 140 - 281
Target Start/End: Complemental strand, 21522879 - 21522737
Alignment:
Q  140 tatgaagcacggatactctttggattaagtgtgttccggtatcggacacgcgtcgtgtctaacactgacacgatattgacatatatgattacattcaatt 239  Q
    ||||| ||||||| ||||||||||||| | |||| |||||  |||||||| ||||||||  |||| ||||||| |  ||||  | | |||||| | ||||    
T  21522879 tatgatgcacggacactctttggattaggcgtgtcccggtgccggacacgtgtcgtgtccgacaccgacacgacaccgacaattgtaattacactgaatt 21522780  T
Q  240 atgtgattttttcaaattactaacggtgtc-gcgtgtcagtgt 281  Q
    |||| ||||||| |||||| || | ||||| ||||||||||||    
T  21522779 atgttattttttaaaattattagctgtgtcggcgtgtcagtgt 21522737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 140 - 281
Target Start/End: Complemental strand, 21533445 - 21533303
Alignment:
Q  140 tatgaagcacggatactctttggattaagtgtgttccggtatcggacacgcgtcgtgtctaacactgacacgatattgacatatatgattacattcaatt 239  Q
    ||||| ||||||| ||||||||||||| | |||| |||||  |||||||| ||||||||  |||| ||||||| |  ||||  | | |||||| | ||||    
T  21533445 tatgatgcacggacactctttggattaggcgtgtcccggtgccggacacgtgtcgtgtccgacaccgacacgacaccgacaattgtaattacactgaatt 21533346  T
Q  240 atgtgattttttcaaattactaacggtgtc-gcgtgtcagtgt 281  Q
    |||| ||||||| |||||| || | ||||| ||||||||||||    
T  21533345 atgttattttttaaaattattagctgtgtcggcgtgtcagtgt 21533303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 227 - 281
Target Start/End: Complemental strand, 31084365 - 31084310
Alignment:
Q  227 attacattcaattatgtgattttttcaaattactaacggtgtc-gcgtgtcagtgt 281  Q
    |||||||| ||||||||||||||||||||||| || | ||||| ||||||||||||    
T  31084365 attacattgaattatgtgattttttcaaattattagctgtgtcggcgtgtcagtgt 31084310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 268
Target Start/End: Original strand, 43208281 - 43208332
Alignment:
Q  217 gacatatatgattacattcaattatgtgattttttcaaattactaacggtgt 268  Q
    |||| ||||||||||||| |||||||| ||||| ||||||||||| ||||||    
T  43208281 gacagatatgattacattgaattatgtcattttctcaaattactatcggtgt 43208332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 218 - 256
Target Start/End: Original strand, 2703473 - 2703511
Alignment:
Q  218 acatatatgattacattcaattatgtgattttttcaaat 256  Q
    |||||||||||||||||||||| ||| ||||||||||||    
T  2703473 acatatatgattacattcaattgtgtcattttttcaaat 2703511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 236 - 281
Target Start/End: Original strand, 19552569 - 19552615
Alignment:
Q  236 aattatgtgattttttcaaattactaacggtgtc-gcgtgtcagtgt 281  Q
    ||||||||||||||||||||||| |||| ||||| ||||||||||||    
T  19552569 aattatgtgattttttcaaattattaactgtgtcggcgtgtcagtgt 19552615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 222 - 258
Target Start/End: Complemental strand, 16881183 - 16881147
Alignment:
Q  222 atatgattacattcaattatgtgattttttcaaatta 258  Q
    ||||||||||||| |||||||| ||||||||||||||    
T  16881183 atatgattacattaaattatgtcattttttcaaatta 16881147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 222 - 270
Target Start/End: Original strand, 38749575 - 38749623
Alignment:
Q  222 atatgattacattcaattatgtgattttttcaaattactaacggtgtcg 270  Q
    |||| |||||||| |||||||| |||||||||||||| || ||||||||    
T  38749575 atataattacattgaattatgtcattttttcaaattattatcggtgtcg 38749623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 1e-18; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 140 - 282
Target Start/End: Complemental strand, 17302686 - 17302542
Alignment:
Q  140 tatgaagcacggatactctttggattaagtgtgttccggtatcggacacgcgtcgtgtctaacactgacacgatattgacatatatgattacattcaatt 239  Q
    |||||| |||||| | ||||||||||| |||||||||| | ||||||||| || |||||||| |||||||||| | |||||  | | |||||||| ||||    
T  17302686 tatgaaacacggacattctttggattaggtgtgttccgatgtcggacacgtgttgtgtctaatactgacacgacaatgacacttgtaattacattgaatt 17302587  T
Q  240 atgtgatt-ttttcaaattactaacggtgtc-gcgtgtcagtgtt 282  Q
    |||||||| ||||||||||| ||   ||||| |||||||||||||    
T  17302586 atgtgatttttttcaaattattagttgtgtcagcgtgtcagtgtt 17302542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 138 - 258
Target Start/End: Complemental strand, 31385050 - 31384931
Alignment:
Q  138 attatgaagcacggatactctttggattaagtgtgttccggtatcggacacgcgtcgtgtctaacactgacacgatattgacatatatgattacattcaa 237  Q
    ||||||||||||||| |||| |||||||| | |||| ||||| | ||||||| |||||||| |||||| |||||| | |||||  | | |||||| | ||    
T  31385050 attatgaagcacggacactccttggattaggcgtgtcccggtgtaggacacgtgtcgtgtccaacact-acacgacactgacacttgtaattacactgaa 31384952  T
Q  238 ttatgtgattttttcaaatta 258  Q
    |||||||||||||||||||||    
T  31384951 ttatgtgattttttcaaatta 31384931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 140 - 281
Target Start/End: Complemental strand, 16766826 - 16766684
Alignment:
Q  140 tatgaagcacggatactctttggattaagtgtgttccggtatcggacacgcgtcgtgtctaacactgacacgatattgacatatatgattacattcaatt 239  Q
    ||||||||||||| | |||| |||||| | |||| ||||| ||||||||| || |||||  |||| ||||||| |  ||||  | | |||||| | ||||    
T  16766826 tatgaagcacggacattcttcggattaggcgtgtcccggtgtcggacacgtgttgtgtccgacaccgacacgacaccgacacttgtaattacactgaatt 16766727  T
Q  240 atgtgattttttcaaattactaacggtgtc-gcgtgtcagtgt 281  Q
    ||||||||||||||||||| || | ||||| ||||||||||||    
T  16766726 atgtgattttttcaaattattagctgtgtcggcgtgtcagtgt 16766684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 227 - 281
Target Start/End: Original strand, 426531 - 426586
Alignment:
Q  227 attacattcaattatgtgattttttcaaattactaacggtgtc-gcgtgtcagtgt 281  Q
    |||||||| ||||||||||||||||||||||| |||| ||||| ||||||||||||    
T  426531 attacatttaattatgtgattttttcaaattattaactgtgtcggcgtgtcagtgt 426586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 217 - 270
Target Start/End: Complemental strand, 10842584 - 10842531
Alignment:
Q  217 gacatatatgattacattcaattatgtgattttttcaaattactaacggtgtcg 270  Q
    |||| ||||||||||| | ||||||||||||||||||||||| || ||||||||    
T  10842584 gacacatatgattacactaaattatgtgattttttcaaattattagcggtgtcg 10842531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 269
Target Start/End: Complemental strand, 5462737 - 5462686
Alignment:
Q  218 acatatatgattacattcaattatgtgattttttcaaattactaacggtgtc 269  Q
    |||||||| |||||| | |||||||||||||| |||||||| ||||||||||    
T  5462737 acatatataattacaatgaattatgtgattttctcaaattattaacggtgtc 5462686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 191
Target Start/End: Complemental strand, 7625234 - 7625183
Alignment:
Q  140 tatgaagcacggatactctttggattaagtgtgttccggtatcggacacgcg 191  Q
    ||||||||||| | |||| |||||||||| |||||||||| |||||||||||    
T  7625234 tatgaagcacgaacactccttggattaagcgtgttccggtgtcggacacgcg 7625183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 140 - 258
Target Start/End: Original strand, 9107300 - 9107418
Alignment:
Q  140 tatgaagcacggatactctttggattaagtgtgttccggtatcggacacgcgtcgtgtctaacactgacacgatattgacatatatgattacattcaatt 239  Q
    ||||||||||||  |||| | |||||| |||||| ||||| |||||||| ||| |||||  |||| ||||||| |  ||||  | | |||||| | ||||    
T  9107300 tatgaagcacgggcactcctcggattaggtgtgtcccggtgtcggacacacgttgtgtccgacaccgacacgacaccgacacttgtaattacactgaatt 9107399  T
Q  240 atgtgattttttcaaatta 258  Q
     ||||||||||||||||||    
T  9107400 ttgtgattttttcaaatta 9107418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 140 - 209
Target Start/End: Complemental strand, 9658998 - 9658928
Alignment:
Q  140 tatgaagcacggatactctttgga-ttaagtgtgttccggtatcggacacgcgtcgtgtctaacactgaca 209  Q
    ||||||||||||| |||| ||||| ||| | |||||||||| || |||||| |||||||||||||| ||||    
T  9658998 tatgaagcacggacactccttggaattaggcgtgttccggtgtcagacacgtgtcgtgtctaacaccgaca 9658928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 227 - 280
Target Start/End: Original strand, 17341681 - 17341735
Alignment:
Q  227 attacattcaattatgtgattttttcaaattactaacggtgtc-gcgtgtcagtg 280  Q
    |||||| | |||||||||||||| |||||||| |||||||||| |||||||||||    
T  17341681 attacactgaattatgtgattttatcaaattattaacggtgtcggcgtgtcagtg 17341735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 217 - 281
Target Start/End: Original strand, 5732517 - 5732582
Alignment:
Q  217 gacatatatgattacattcaattatgtgattttttcaaattactaacggtgtc-gcgtgtcagtgt 281  Q
    |||| |||| |||||| | || ||||||||||| |||||||| |||||||||| ||||||||||||    
T  5732517 gacacatataattacactaaaatatgtgattttctcaaattattaacggtgtcggcgtgtcagtgt 5732582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 217 - 258
Target Start/End: Original strand, 26314641 - 26314682
Alignment:
Q  217 gacatatatgattacattcaattatgtgattttttcaaatta 258  Q
    ||||||||| |||||||| |||||| ||||||||||||||||    
T  26314641 gacatatataattacattgaattatatgattttttcaaatta 26314682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 269
Target Start/End: Complemental strand, 30537553 - 30537500
Alignment:
Q  216 tgacatatatgattacattcaattatgtgattttttcaaattactaacggtgtc 269  Q
    ||||| || |||| |||||||||||||| ||||| | |||||||||||||||||    
T  30537553 tgacacatctgataacattcaattatgttattttcttaaattactaacggtgtc 30537500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 217 - 258
Target Start/End: Original strand, 33001296 - 33001337
Alignment:
Q  217 gacatatatgattacattcaattatgtgattttttcaaatta 258  Q
    |||| |||| |||||||| |||||||||||||||||||||||    
T  33001296 gacacatataattacatttaattatgtgattttttcaaatta 33001337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 224 - 268
Target Start/End: Original strand, 2493428 - 2493472
Alignment:
Q  224 atgattacattcaattatgtgattttttcaaattactaacggtgt 268  Q
    |||||||||||||||||||| ||||| |||||||| || ||||||    
T  2493428 atgattacattcaattatgtcattttgtcaaattattatcggtgt 2493472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 227 - 263
Target Start/End: Original strand, 4118350 - 4118386
Alignment:
Q  227 attacattcaattatgtgattttttcaaattactaac 263  Q
    |||||||| ||||||||||||||||||||||| ||||    
T  4118350 attacatttaattatgtgattttttcaaattattaac 4118386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 206 - 258
Target Start/End: Original strand, 9024172 - 9024224
Alignment:
Q  206 gacacgatattgacatatatgattacattcaattatgtgattttttcaaatta 258  Q
    ||||||| | ||||| ||||||||||||| |||||||| ||||| ||||||||    
T  9024172 gacacgacactgacacatatgattacattgaattatgtcattttctcaaatta 9024224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 225 - 261
Target Start/End: Original strand, 10335391 - 10335427
Alignment:
Q  225 tgattacattcaattatgtgattttttcaaattacta 261  Q
    ||||||||||||||||||| ||||| |||||||||||    
T  10335391 tgattacattcaattatgtcattttctcaaattacta 10335427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 140 - 282
Target Start/End: Original strand, 10339055 - 10339199
Alignment:
Q  140 tatgaagcacggatactctttggattaagtgtgttccggtatcggacacgcgtcgtgtctaacactgacacgatattgacatatatgatta-cattcaat 238  Q
    ||||||||||||| |||| |  ||||| | |||| || || ||||||| | ||||||||  |||| ||||||  | ||||| |||| |||| || | |||    
T  10339055 tatgaagcacggacactcctccgattaggcgtgtcccagtgtcggacatgtgtcgtgtccgacaccgacacggcactgacacatataattaacactgaat 10339154  T
Q  239 tatgtgattttttcaaattactaacggtgtc-gcgtgtcagtgtt 282  Q
    ||||||||||| |||||||| |  ||||||| |||||||||||||    
T  10339155 tatgtgattttctcaaattaatcgcggtgtcggcgtgtcagtgtt 10339199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 217 - 281
Target Start/End: Original strand, 33468389 - 33468452
Alignment:
Q  217 gacatatatgattacattcaattatgtgattttttcaaattactaacggtgtcgcgtgtcagtgt 281  Q
    ||||||||| |||||||| ||||| || |||||||||||||| || |||||| ||| ||||||||    
T  33468389 gacatatataattacattgaattaagttattttttcaaattattagcggtgt-gcgcgtcagtgt 33468452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 3e-16; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 140 - 256
Target Start/End: Original strand, 30982808 - 30982924
Alignment:
Q  140 tatgaagcacggatactctttggattaagtgtgttccggtatcggacacgcgtcgtgtctaacactgacacgatattgacatatatgattacattcaatt 239  Q
    ||||||||||||| ||||||||||||| | |||| ||||| ||||||||| ||||||||| |||| ||||||| |  ||||  ||| |||||| | || |    
T  30982808 tatgaagcacggacactctttggattaggcgtgtcccggtgtcggacacgtgtcgtgtctgacaccgacacgacaccgacacttataattacactgaaat 30982907  T
Q  240 atgtgattttttcaaat 256  Q
    |||||||||| ||||||    
T  30982908 atgtgattttctcaaat 30982924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 159 - 267
Target Start/End: Complemental strand, 904032 - 903924
Alignment:
Q  159 ttggattaagtgtgttccggtatcggacacgcgtcgtgtctaacactgacacgatattgacatatatgattacattcaattatgtgattttttcaaatta 258  Q
    ||||||||  ||||| || || ||||||||  |||||||| ||||| || |||||| ||| | |||| |||||| | |||||||||||||| ||||||||    
T  904032 ttggattagatgtgtcccagtgtcggacacatgtcgtgtccaacaccgatacgatactgatacatataattacactgaattatgtgattttctcaaatta 903933  T
Q  259 ctaacggtg 267  Q
     ||||||||    
T  903932 ttaacggtg 903924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 140 - 198
Target Start/End: Complemental strand, 35161154 - 35161096
Alignment:
Q  140 tatgaagcacggatactctttggattaagtgtgttccggtatcggacacgcgtcgtgtc 198  Q
    ||||||||||||| ||| || |||||| |||||||||||| ||||||||| ||||||||    
T  35161154 tatgaagcacggacacttttcggattaggtgtgttccggtgtcggacacgtgtcgtgtc 35161096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 140 - 258
Target Start/End: Complemental strand, 36635448 - 36635335
Alignment:
Q  140 tatgaagcacggatactctttggattaagtgtgttccggtatcggacacgcgtcgtgtctaacactgacacgatattgacatatatgattacattcaatt 239  Q
    ||||||||||||| |||||| |||||| | |||| ||||| || ||| || ||||||||| ||||| ||||||     ||| |||| |||||| | ||||    
T  36635448 tatgaagcacggacactcttcggattaggcgtgtcccggtgtctgacgcgtgtcgtgtctgacactcacacga-----acacatataattacactgaatt 36635354  T
Q  240 atgtgattttttcaaatta 258  Q
    |||||||||| ||||||||    
T  36635353 atgtgattttctcaaatta 36635335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 217 - 279
Target Start/End: Original strand, 5775365 - 5775427
Alignment:
Q  217 gacatatatgattacattcaattatgtgattttttcaaattactaacggtgtcgcgtgtcagt 279  Q
    |||| |||| |||||| | |||||||||||||| |||||||| ||| ||||||| ||||||||    
T  5775365 gacacatataattacacttaattatgtgattttctcaaattattaatggtgtcgtgtgtcagt 5775427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 269
Target Start/End: Original strand, 18513247 - 18513300
Alignment:
Q  216 tgacatatatgattacattcaattatgtgattttttcaaattactaacggtgtc 269  Q
    ||||| ||||||||||||| |||||||| ||||| |||||||| || |||||||    
T  18513247 tgacacatatgattacattgaattatgtcattttctcaaattattatcggtgtc 18513300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 270
Target Start/End: Original strand, 21732375 - 21732420
Alignment:
Q  225 tgattacattcaattatgtgattttttcaaattactaacggtgtcg 270  Q
    |||||||| |||||||||| ||||||||||||| ||| ||||||||    
T  21732375 tgattacaatcaattatgtcattttttcaaattcctaccggtgtcg 21732420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 217 - 258
Target Start/End: Complemental strand, 33950188 - 33950147
Alignment:
Q  217 gacatatatgattacattcaattatgtgattttttcaaatta 258  Q
    |||| ||||||||||||| |||||||||||||| ||||||||    
T  33950188 gacacatatgattacattaaattatgtgattttctcaaatta 33950147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 138 - 198
Target Start/End: Original strand, 3947700 - 3947760
Alignment:
Q  138 attatgaagcacggatactctttggattaagtgtgttccggtatcggacacgcgtcgtgtc 198  Q
    ||||||||||||||| |||| | |||||| |||||| | ||| ||||||||| ||||||||    
T  3947700 attatgaagcacggacactcctcggattaggtgtgtcctggtgtcggacacgtgtcgtgtc 3947760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 140 - 212
Target Start/End: Original strand, 5414102 - 5414174
Alignment:
Q  140 tatgaagcacggatactctttggattaagtgtgttccggtatcggacacgcgtcgtgtctaacactgacacga 212  Q
    ||||||||||||| |||| |||||| | |||||| || || || |||||| ||||||||  ||||||||||||    
T  5414102 tatgaagcacggacactccttggataaggtgtgtccctgtgtcagacacgtgtcgtgtccgacactgacacga 5414174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 222 - 270
Target Start/End: Original strand, 22440612 - 22440660
Alignment:
Q  222 atatgattacattcaattatgtgattttttcaaattactaacggtgtcg 270  Q
    |||| |||||| | |||||||||||||| |||||||| |||||||||||    
T  22440612 atataattacactgaattatgtgattttctcaaattattaacggtgtcg 22440660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 224 - 268
Target Start/End: Original strand, 27096015 - 27096059
Alignment:
Q  224 atgattacattcaattatgtgattttttcaaattactaacggtgt 268  Q
    |||||||||||||||||||| ||||| |||||||| || ||||||    
T  27096015 atgattacattcaattatgtcattttgtcaaattattatcggtgt 27096059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 161 - 209
Target Start/End: Complemental strand, 40481738 - 40481690
Alignment:
Q  161 ggattaagtgtgttccggtatcggacacgcgtcgtgtctaacactgaca 209  Q
    |||||||||||||| |||| ||||||||| |||||||| ||||| ||||    
T  40481738 ggattaagtgtgtttcggtgtcggacacgtgtcgtgtccaacaccgaca 40481690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 216 - 264
Target Start/End: Original strand, 44081583 - 44081631
Alignment:
Q  216 tgacatatatgattacattcaattatgtgattttttcaaattactaacg 264  Q
    ||||| |||| |||||||| |||||| |||||||||||||||| |||||    
T  44081583 tgacacatataattacattaaattatatgattttttcaaattattaacg 44081631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 224 - 256
Target Start/End: Complemental strand, 49345773 - 49345741
Alignment:
Q  224 atgattacattcaattatgtgattttttcaaat 256  Q
    |||||||||||||||||||| ||||||||||||    
T  49345773 atgattacattcaattatgttattttttcaaat 49345741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 139 - 281
Target Start/End: Complemental strand, 32308250 - 32308107
Alignment:
Q  139 ttatgaagcacggatactctttggattaagtgtgttccggtatcggacacgcgtcgtgtctaacactgacacgatattgacatatatgattacattcaat 238  Q
    |||||||||| | | |||| | ||||||  |||||  |||| ||||||| | |||||||| ||||| ||||||| | ||||| |||  |||||| | |||    
T  32308250 ttatgaagcatgaacactcctcggattagctgtgtctcggtgtcggacatgtgtcgtgtccaacaccgacacgacactgacacatacaattacactgaat 32308151  T
Q  239 tatgtgattttttcaaattactaacggtgtc-gcgtgtcagtgt 281  Q
    ||||||||||| |||||||| || ||||||| ||||||||||||    
T  32308150 tatgtgattttctcaaattattagcggtgtcggcgtgtcagtgt 32308107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 141 - 258
Target Start/End: Original strand, 26033392 - 26033509
Alignment:
Q  141 atgaagcacggatactctttggattaagtgtgttccggtatcggacacgcgtcgtgtctaacactgacacgatattgacatatatgattacattcaatta 240  Q
    ||||| |||||| |||| | |||||| ||||||  |||||||||||||| ||| ||||| |||| ||||||| |  ||||  | | |||||| | |||||    
T  26033392 atgaaacacggacactcctcggattaggtgtgtcgcggtatcggacacgtgtcatgtctgacaccgacacgagaccgacacttgtaattacactgaatta 26033491  T
Q  241 tgtgattttttcaaatta 258  Q
    ||||||||||||||||||    
T  26033492 tgtgattttttcaaatta 26033509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 227 - 285
Target Start/End: Complemental strand, 7438748 - 7438689
Alignment:
Q  227 attacattcaattatgtgattttttcaaattactaacggtgtc-gcgtgtcagtgtttat 285  Q
    |||||||| ||||||||||||||||||||||| |||| ||||| || |||||||||||||    
T  7438748 attacattgaattatgtgattttttcaaattattaactgtgtcggcatgtcagtgtttat 7438689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 216 - 281
Target Start/End: Original strand, 42720896 - 42720962
Alignment:
Q  216 tgacatatatgattacattcaattatgtgattttttcaaattactaacggtgtc-gcgtgtcagtgt 281  Q
    ||||| |||| |||||||| ||||||||||||||||||||||| || |||||||  |||||||||||    
T  42720896 tgacacatataattacatttaattatgtgattttttcaaattattagcggtgtcaacgtgtcagtgt 42720962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 237 - 281
Target Start/End: Original strand, 21828432 - 21828477
Alignment:
Q  237 attatgtgattttttcaaattactaacggtgtc-gcgtgtcagtgt 281  Q
    ||||||||||||| ||||||||||||||||||| ||||||||||||    
T  21828432 attatgtgattttctcaaattactaacggtgtcggcgtgtcagtgt 21828477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 227 - 269
Target Start/End: Complemental strand, 11700845 - 11700803
Alignment:
Q  227 attacattcaattatgtgattttttcaaattactaacggtgtc 269  Q
    |||||||| |||||||||||||| |||||||| ||||||||||    
T  11700845 attacattgaattatgtgattttgtcaaattattaacggtgtc 11700803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 216 - 258
Target Start/End: Complemental strand, 23948445 - 23948403
Alignment:
Q  216 tgacatatatgattacattcaattatgtgattttttcaaatta 258  Q
    ||||| |||||||||||||||||||  ||||||||||||||||    
T  23948445 tgacacatatgattacattcaattaattgattttttcaaatta 23948403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 140 - 258
Target Start/End: Complemental strand, 24339771 - 24339653
Alignment:
Q  140 tatgaagcacggatactctttggattaagtgtgttccggtatcggacacgcgtcgtgtctaacactgacacgatattgacatatatgattacattcaatt 239  Q
    ||||||||||||  |||| | |||||| | |||| ||||| ||||| ||| ||||||||  |||| ||||||| |  ||||  | | |||||| | ||||    
T  24339771 tatgaagcacgggcactcctcggattaggcgtgtcccggtgtcggatacgtgtcgtgtccgacaccgacacgacaccgacacttgtaattacactgaatt 24339672  T
Q  240 atgtgattttttcaaatta 258  Q
    |||||||||||||||||||    
T  24339671 atgtgattttttcaaatta 24339653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 205 - 258
Target Start/End: Original strand, 19930936 - 19930989
Alignment:
Q  205 tgacacgatattgacatatatgattacattcaattatgtgattttttcaaatta 258  Q
    ||||||||||| |||| |||| |||||||| |||||||| ||||| ||||||||    
T  19930936 tgacacgatatcgacacatataattacattgaattatgtcattttatcaaatta 19930989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 140 - 212
Target Start/End: Complemental strand, 21930757 - 21930685
Alignment:
Q  140 tatgaagcacggatactctttggattaagtgtgttccggtatcggacacgcgtcgtgtctaacactgacacga 212  Q
    ||||||||| |||  ||||| |||||| |||||||||||  |||||||||  | ||||| |||||||||||||    
T  21930757 tatgaagcatggactctcttcggattaggtgtgttccggcgtcggacacgtcttgtgtccaacactgacacga 21930685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 217 - 269
Target Start/End: Original strand, 38134413 - 38134465
Alignment:
Q  217 gacatatatgattacattcaattatgtgattttttcaaattactaacggtgtc 269  Q
    |||| ||||||||||||| |||||||| ||||| |||||||| || |||||||    
T  38134413 gacacatatgattacattgaattatgtcattttctcaaattattatcggtgtc 38134465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 222 - 258
Target Start/End: Complemental strand, 38143270 - 38143234
Alignment:
Q  222 atatgattacattcaattatgtgattttttcaaatta 258  Q
    |||| |||||||| |||||||||||||||||||||||    
T  38143270 atataattacattaaattatgtgattttttcaaatta 38143234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 140 - 204
Target Start/End: Original strand, 43027405 - 43027469
Alignment:
Q  140 tatgaagcacggatactctttggattaagtgtgttccggtatcggacacgcgtcgtgtctaacac 204  Q
    ||||||||||||| |||| | |||||| | |||| ||||| ||||||||| ||||||||| ||||    
T  43027405 tatgaagcacggacactcatcggattaggcgtgtcccggtgtcggacacgtgtcgtgtctgacac 43027469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 140 - 281
Target Start/End: Original strand, 29510234 - 29510376
Alignment:
Q  140 tatgaagcacggatactctttggattaagtgtgttccggtatcggacacgcgtcgtgtctaacactgacacgatattgacatatatgattacattcaatt 239  Q
    ||||||||||||| |||| | |||||| |||||| ||||| ||||||||||||||||||  |||| ||||| | |  ||||  | | |||| | | ||||    
T  29510234 tatgaagcacggacactcctcggattaggtgtgtcccggtgtcggacacgcgtcgtgtccgacaccgacactacaccgacacttgtaattatactgaatt 29510333  T
Q  240 atgtgattttttcaaattactaacggtgtc-gcgtgtcagtgt 281  Q
     |||||||||||||||||| || | ||||| ||||||||||||    
T  29510334 ttgtgattttttcaaattattagctgtgtcggcgtgtcagtgt 29510376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 140 - 218
Target Start/End: Original strand, 6065587 - 6065665
Alignment:
Q  140 tatgaagcacggatactctttggattaagtgtgttccggtatcggacacgcgtcgtgtctaacactgacacgatattga 218  Q
    ||||||||||||| |||| ||| |||| | |||||||||| ||||||| | ||||||||  ||| ||||||||||||||    
T  6065587 tatgaagcacggacactccttgaattatgcgtgttccggtgtcggacatgtgtcgtgtccgacattgacacgatattga 6065665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 140 - 281
Target Start/End: Complemental strand, 22652105 - 22651963
Alignment:
Q  140 tatgaagcacggatactctttggattaagtgtgttccggtatcggacacgcgtcgtgtctaacactgacacgatattgacatatatgattacattcaatt 239  Q
    ||||||||||||| |||| | ||||||   |||| ||||| ||||||||  ||||||||  |||| ||||||| |  ||||  | | |||| ||| ||||    
T  22652105 tatgaagcacggacactcctcggattagacgtgtcccggtgtcggacacatgtcgtgtccgacaccgacacgacaccgacacttgtaattatattgaatt 22652006  T
Q  240 atgtgattttttcaaattactaacggtgtc-gcgtgtcagtgt 281  Q
    ||||||||||||||||||| || | ||||| ||||||||||||    
T  22652005 atgtgattttttcaaattattagctgtgtcggcgtgtcagtgt 22651963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 215 - 268
Target Start/End: Complemental strand, 1586662 - 1586609
Alignment:
Q  215 ttgacatatatgattacattcaattatgtgattttttcaaattactaacggtgt 268  Q
    |||||| || ||||||| ||||||||||| |||||||||||||||||| |||||    
T  1586662 ttgacacatgtgattacgttcaattatgtcattttttcaaattactaatggtgt 1586609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 258
Target Start/End: Original strand, 2572015 - 2572104
Alignment:
Q  169 tgtgttccggtatcggacacgcgtcgtgtctaacactgacacgatattgacatatatgattacattcaattatgtgattttttcaaatta 258  Q
    ||||| ||||||||||||||| ||||||||  |||| ||||||| |  ||||  | | |||||| | |||||||||||||||||||||||    
T  2572015 tgtgtcccggtatcggacacgtgtcgtgtccgacacagacacgacaccgacacttgtaattacactaaattatgtgattttttcaaatta 2572104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 217 - 258
Target Start/End: Complemental strand, 12985444 - 12985403
Alignment:
Q  217 gacatatatgattacattcaattatgtgattttttcaaatta 258  Q
    |||||||||||||||||| |||||||||||||| ||||||||    
T  12985444 gacatatatgattacattgaattatgtgattttctcaaatta 12985403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 227 - 270
Target Start/End: Original strand, 4298903 - 4298946
Alignment:
Q  227 attacattcaattatgtgattttttcaaattactaacggtgtcg 270  Q
    |||||||| ||||||||||||||||||||||| |||| ||||||    
T  4298903 attacattaaattatgtgattttttcaaattattaactgtgtcg 4298946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 140 - 210
Target Start/End: Original strand, 3951477 - 3951547
Alignment:
Q  140 tatgaagcacggatactctttggattaagtgtgttccggtatcggacacgcgtcgtgtctaacactgacac 210  Q
    ||||||||||||| |||| |||||||| | ||||||| || || |||||| ||||||||| |||| |||||    
T  3951477 tatgaagcacggaaactccttggattaggcgtgttcccgtgtcagacacgtgtcgtgtctgacaccgacac 3951547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 217 - 258
Target Start/End: Complemental strand, 22493546 - 22493505
Alignment:
Q  217 gacatatatgattacattcaattatgtgattttttcaaatta 258  Q
    |||||||||||||||| | |||||||||||||||| ||||||    
T  22493546 gacatatatgattacactgaattatgtgattttttaaaatta 22493505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 270
Target Start/End: Original strand, 24362193 - 24362262
Alignment:
Q  201 acactgacacgatattgacatatatgattacattcaattatgtgattttttcaaattactaacggtgtcg 270  Q
    |||| ||||||| ||||||| |||| |||||| | |||||||||||| | |||||||| || ||||||||    
T  24362193 acaccgacacgacattgacacatataattacactgaattatgtgattctctcaaattattagcggtgtcg 24362262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 269
Target Start/End: Complemental strand, 32691796 - 32691743
Alignment:
Q  216 tgacatatatgattacattcaattatgtgattttttcaaattactaacggtgtc 269  Q
    ||||| || ||||||||||||||||||| ||||| | ||||||||| |||||||    
T  32691796 tgacacatgtgattacattcaattatgtcattttcttaaattactaccggtgtc 32691743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0652 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 139 - 198
Target Start/End: Original strand, 402 - 461
Alignment:
Q  139 ttatgaagcacggatactctttggattaagtgtgttccggtatcggacacgcgtcgtgtc 198  Q
    |||||||||||||| |||| | |||||| |||||| ||||| ||||||||||||||||||    
T  402 ttatgaagcacggacactcctcggattaggtgtgtcccggtgtcggacacgcgtcgtgtc 461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000006; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 143 - 258
Target Start/End: Complemental strand, 11666070 - 11665955
Alignment:
Q  143 gaagcacggatactctttggattaagtgtgttccggtatcggacacgcgtcgtgtctaacactgacacgatattgacatatatgattacattcaattatg 242  Q
    |||||||||| |||| ||| |||| | |||||||| |||| |||||| |||||||||||||   |||||| |  |||| |||| |||||| | |||| ||    
T  11666070 gaagcacggacactccttgaattaggcgtgttccgatatcagacacgtgtcgtgtctaacatcaacacgacaccgacacatataattacactaaattgtg 11665971  T
Q  243 tgattttttcaaatta 258  Q
    ||||||| ||||||||    
T  11665970 tgattttatcaaatta 11665955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 218 - 268
Target Start/End: Complemental strand, 4201447 - 4201397
Alignment:
Q  218 acatatatgattacattcaattatgtgattttttcaaattactaacggtgt 268  Q
    |||||||| |||||| | ||||||||||||||||||||||| |||||||||    
T  4201447 acatatataattacacttaattatgtgattttttcaaattattaacggtgt 4201397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 141 - 282
Target Start/End: Original strand, 4987222 - 4987364
Alignment:
Q  141 atgaagcacggatactctttggattaagtgtgttccggtatcggacacgcgtcgtgtctaacactgacacgatattgacatatatgattacattcaatta 240  Q
    |||||| ||||| |||| | |||||| | |||| ||||| ||||||||| |||||||| ||||| ||||||  |   |||  | | |||||| | |||||    
T  4987222 atgaagtacggacactcctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtccaacaccgacacgtcaccaacacttgtaattacactgaatta 4987321  T
Q  241 tgtgattttttcaaattactaacggtgtc-gcgtgtcagtgtt 282  Q
    |||||||||||||||||| || | ||||| |||||||||||||    
T  4987322 tgtgattttttcaaattattagctgtgtcggcgtgtcagtgtt 4987364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 207 - 257
Target Start/End: Complemental strand, 39002094 - 39002044
Alignment:
Q  207 acacgatattgacatatatgattacattcaattatgtgattttttcaaatt 257  Q
    |||||| | |||||||||| |||||||| ||||||||||||||||||||||    
T  39002094 acacgacactgacatatataattacattgaattatgtgattttttcaaatt 39002044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 227 - 281
Target Start/End: Original strand, 10268503 - 10268558
Alignment:
Q  227 attacattcaattatgtgattttttcaaattactaacggtgtc-gcgtgtcagtgt 281  Q
    |||||| | ||||||||||||||||||||||| |||| ||||| ||||||||||||    
T  10268503 attacactaaattatgtgattttttcaaattattaactgtgtcggcgtgtcagtgt 10268558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 270
Target Start/End: Original strand, 16192731 - 16192810
Alignment:
Q  191 gtcgtgtctaacactgacacgatattgacatatatgattacattcaattatgtgattttttcaaattactaacggtgtcg 270  Q
    ||||||||| |||| ||||||| ||  ||| |||| |||||| | |||||||| ||||| |||||||| |||||||||||    
T  16192731 gtcgtgtctgacaccgacacgacatcaacacatataattacactgaattatgttattttctcaaattattaacggtgtcg 16192810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 270
Target Start/End: Complemental strand, 37077488 - 37077357
Alignment:
Q  140 tatgaagcacggatactctttggattaagtgtgttccggtatcggacacgcgt-cgtgtctaacactgacacgatattgacatatatgattacattcaat 238  Q
    ||||||||||||| | || |||||||| |||||| || || ||||||| |||| |||||   |||| |||| || | ||||| |||||||| |||| |||    
T  37077488 tatgaagcacggacattccttggattaggtgtgtccccgtgtcggacatgcgtccgtgtacgacaccgacatgacaatgacacatatgattccattgaat 37077389  T
Q  239 tatgtgattttttcaaattactaacggtgtcg 270  Q
    ||||| || || |||||||| || ||||||||    
T  37077388 tatgttatattctcaaattattatcggtgtcg 37077357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 140 - 258
Target Start/End: Complemental strand, 14209242 - 14209124
Alignment:
Q  140 tatgaagcacggatactctttggattaagtgtgttccggtatcggacacgcgtcgtgtctaacactgacacgatattgacatatatgattacattcaatt 239  Q
    ||||||||||||| |||  |||||||| |||| | ||| | ||| ||||| ||||||||  |||| ||||||| | |||||  | | |||||| | ||||    
T  14209242 tatgaagcacggacacttcttggattaggtgtatcccgatgtcgtacacgtgtcgtgtccgacaccgacacgacactgacacttgtaattacactgaatt 14209143  T
Q  240 atgtgattttttcaaatta 258  Q
    |||||||||||| ||||||    
T  14209142 atgtgattttttaaaatta 14209124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 191 - 268
Target Start/End: Complemental strand, 1550218 - 1550141
Alignment:
Q  191 gtcgtgtctaacactgacacgatattgacatatatgattacattcaattatgtgattttttcaaattactaacggtgt 268  Q
    |||||||| ||||||||||||| | |||||  ||| |||||| | |||  |||||||||||||||||| || ||||||    
T  1550218 gtcgtgtcgaacactgacacgacactgacacctataattacactgaatagtgtgattttttcaaattattagcggtgt 1550141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 217 - 270
Target Start/End: Complemental strand, 7928502 - 7928449
Alignment:
Q  217 gacatatatgattacattcaattatgtgattttttcaaattactaacggtgtcg 270  Q
    |||| |||| |||||| | ||||||||||||||||||||||| || ||||||||    
T  7928502 gacacatataattacactgaattatgtgattttttcaaattattagcggtgtcg 7928449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 217 - 270
Target Start/End: Original strand, 32804547 - 32804600
Alignment:
Q  217 gacatatatgattacattcaattatgtgattttttcaaattactaacggtgtcg 270  Q
    |||| |||| |||||| | |||||||||||||| |||||||| |||||||||||    
T  32804547 gacacatataattacactaaattatgtgattttctcaaattattaacggtgtcg 32804600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 170 - 258
Target Start/End: Complemental strand, 14832198 - 14832110
Alignment:
Q  170 gtgttccggtatcggacacgcgtcgtgtctaacactgacacgatattgacatatatgattacattcaattatgtgattttttcaaatta 258  Q
    |||| ||||| ||||||||| ||||||||  | || ||||||| | |||||  | | |||||||| | |||||||||||||||||||||    
T  14832198 gtgtcccggtgtcggacacgtgtcgtgtccgataccgacacgacactgacacttgtaattacattgagttatgtgattttttcaaatta 14832110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 556 - 649
Target Start/End: Complemental strand, 63638 - 63545
Alignment:
Q  556 tttttcctcttcatacttgttgcactgaaaatagggaagaatctcaaggaaaaaaggtc-agctccaaagctaccaccaggtccatggaagctac 649  Q
    ||||||||||  || ||||| ||| ||||||| ||||||||||||| | ||||||| || ||||||||| ||||| ||||| |||||||||||||    
T  63638 tttttcctctcaatgcttgtggcattgaaaatggggaagaatctcatg-aaaaaagctccagctccaaacctacctccaggaccatggaagctac 63545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 139 - 269
Target Start/End: Complemental strand, 44860450 - 44860320
Alignment:
Q  139 ttatgaagcacggatactctttggattaagtgtgttccggtatcggacacgcgtcgtgtctaacactgacacgatattgacatatatgattacattcaat 238  Q
    |||||||||||||| |||| | | |||| |||||| ||| | ||||||||  |||||||| |||||  |||||| |  |||| |||| |||||| | |||    
T  44860450 ttatgaagcacggacactcctcgaattaggtgtgtcccgatgtcggacacatgtcgtgtccaacaccaacacgacaccgacacatataattacactgaat 44860351  T
Q  239 tatgtgattttttcaaattactaacggtgtc 269  Q
    |||| |||||| |||||||| || |||||||    
T  44860350 tatgcgattttctcaaattattagcggtgtc 44860320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 227 - 281
Target Start/End: Original strand, 30404867 - 30404922
Alignment:
Q  227 attacattcaattatgtgattttttcaaattactaacggtgtc-gcgtgtcagtgt 281  Q
    |||||| | ||||||||||||||||||||||| |||| ||||| ||||||||||||    
T  30404867 attacactgaattatgtgattttttcaaattattaaccgtgtcggcgtgtcagtgt 30404922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 140 - 210
Target Start/End: Original strand, 18840954 - 18841024
Alignment:
Q  140 tatgaagcacggatactctttggattaagtgtgttccggtatcggacacgcgtcgtgtctaacactgacac 210  Q
    ||||||||||||| |||| | |||||| |||||| ||||| ||||||| | ||||||||| |||| |||||    
T  18840954 tatgaagcacggacactcctcggattaggtgtgtcccggtgtcggacatgtgtcgtgtctgacaccgacac 18841024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 140 - 258
Target Start/End: Original strand, 30717460 - 30717578
Alignment:
Q  140 tatgaagcacggatactctttggattaagtgtgttccggtatcggacacgcgtcgtgtctaacactgacacgatattgacatatatgattacattcaatt 239  Q
    ||||||||||||| |||| |||||||| | || | || || ||| ||||| ||||||||  |||  ||||||| || ||||  | | |||||| | ||||    
T  30717460 tatgaagcacggacactccttggattaggcgtatcccagtgtcgaacacgtgtcgtgtccgacaacgacacgacatcgacacttgtaattacactgaatt 30717559  T
Q  240 atgtgattttttcaaatta 258  Q
    |||||||||||||||||||    
T  30717560 atgtgattttttcaaatta 30717578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 140 - 258
Target Start/End: Complemental strand, 37419872 - 37419754
Alignment:
Q  140 tatgaagcacggatactctttggattaagtgtgttccggtatcggacacgcgtcgtgtctaacactgacacgatattgacatatatgattacattcaatt 239  Q
    ||||||||||||| |||| | |||||| | |||| ||||| |||||||||| |||||||  |||| ||||||| |  | ||  | | |||||| | ||||    
T  37419872 tatgaagcacggacactcctcggattaggcgtgtcccggtgtcggacacgcatcgtgtccgacaccgacacgacaccggcacttgtaattacactgaatt 37419773  T
Q  240 atgtgattttttcaaatta 258  Q
     ||||||||||||||||||    
T  37419772 ttgtgattttttcaaatta 37419754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 140 - 269
Target Start/End: Complemental strand, 19959944 - 19959815
Alignment:
Q  140 tatgaagcacggatactctttggattaagtgtgttccggtatcggacacgcgtcgtgtctaacactgacacgatattgacatatatgattacattcaatt 239  Q
    |||||||||| ||||||||||||||||   | ||  |||| ||||||||  ||||||||| |||  || || | ||||||| | |||  || ||| ||||    
T  19959944 tatgaagcaccgatactctttggattagacgcgtctcggtgtcggacacttgtcgtgtctgacatcgatacaacattgacacacatgtatatattgaatt 19959845  T
Q  240 atgtgattttttcaaattactaacggtgtc 269  Q
    |||||||||| |||||||| ||||| ||||    
T  19959844 atgtgattttgtcaaattattaacgatgtc 19959815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 154 - 258
Target Start/End: Complemental strand, 4207971 - 4207868
Alignment:
Q  154 actctttggattaagtgtgttccggtatcggacacgcgtcgtgtctaacactgacacgatattgacatatatgattacattcaattatgtgattttttca 253  Q
    |||||| |||||||  ||||| |||| ||| ||||| ||||||||  |||| |||||||||  |||| |||| |||||| | ||||||| | ||||||||    
T  4207971 actcttcggattaaacgtgtttcggtgtcgaacacgtgtcgtgtccgacaccgacacgataccgaca-atataattacactaaattatgcgcttttttca 4207873  T
Q  254 aatta 258  Q
    |||||    
T  4207872 aatta 4207868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 216 - 268
Target Start/End: Complemental strand, 18571025 - 18570973
Alignment:
Q  216 tgacatatatgattacattcaattatgtgattttttcaaattactaacggtgt 268  Q
    ||||| ||||||||||||| |||||||| ||||| |||||||| || ||||||    
T  18571025 tgacacatatgattacattgaattatgtcattttctcaaattattatcggtgt 18570973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 217 - 281
Target Start/End: Original strand, 18889598 - 18889662
Alignment:
Q  217 gacatatatgattacattcaattatgtgattttttcaaattactaacggtgtcgcgtgtcagtgt 281  Q
    |||| ||||||||||| | |||||||||||||| |||| ||| || ||| |||||||||| ||||    
T  18889598 gacacatatgattacactgaattatgtgattttctcaatttattagcggcgtcgcgtgtccgtgt 18889662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 138 - 258
Target Start/End: Original strand, 27286220 - 27286340
Alignment:
Q  138 attatgaagcacggatactctttggattaagtgtgttccggtatcggacacgcgtcgtgtctaacactgacacgatattgacatatatgattacattcaa 237  Q
    |||||||||||| || ||||||| |||||  | ||| ||||| ||||||| | ||||||||  |||  |||| || |||||||  ||| |||||| | ||    
T  27286220 attatgaagcacagacactctttagattagatatgtcccggtgtcggacatgtgtcgtgtccgacatcgacatgacattgacacctataattacacttaa 27286319  T
Q  238 ttatgtgattttttcaaatta 258  Q
    ||||||||| || ||||||||    
T  27286320 ttatgtgatcttatcaaatta 27286340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 222 - 270
Target Start/End: Complemental strand, 28677956 - 28677908
Alignment:
Q  222 atatgattacattcaattatgtgattttttcaaattactaacggtgtcg 270  Q
    |||| |||||| | ||||||||||||||||||||||| || ||||||||    
T  28677956 atataattacactgaattatgtgattttttcaaattattagcggtgtcg 28677908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 222 - 266
Target Start/End: Complemental strand, 36281732 - 36281688
Alignment:
Q  222 atatgattacattcaattatgtgattttttcaaattactaacggt 266  Q
    ||||||||||| | |||||||||||||| |||||||| |||||||    
T  36281732 atatgattacactaaattatgtgattttctcaaattattaacggt 36281688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1300 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold1300
Description:

Target: scaffold1300; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 184 - 264
Target Start/End: Complemental strand, 660 - 580
Alignment:
Q  184 gacacgcgtcgtgtctaacactgacacgatattgacatatatgattacattcaattatgtgattttttcaaattactaacg 264  Q
    ||||||||| ||||   |||||||||||| | |||||||||| ||||||   |||||||||||||||| |||||| |||||    
T  660 gacacgcgttgtgttcgacactgacacgacactgacatatataattacacataattatgtgatttttttaaattagtaacg 580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 181 - 257
Target Start/End: Original strand, 44496 - 44572
Alignment:
Q  181 tcggacacgcgtcgtgtctaacactgacacgatattgacatatatgattacattcaattatgtgattttttcaaatt 257  Q
    ||||||||| || ||||| ||||| |||||||||  |||| |||| |||||| | |||||||||||||| |||||||    
T  44496 tcggacacgtgttgtgtccaacaccgacacgataccgacacatataattacactgaattatgtgattttctcaaatt 44572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0246 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 161 - 209
Target Start/End: Complemental strand, 19677 - 19629
Alignment:
Q  161 ggattaagtgtgttccggtatcggacacgcgtcgtgtctaacactgaca 209  Q
    |||||||||||||| |||| ||||||||| |||||||| ||||| ||||    
T  19677 ggattaagtgtgtttcggtgtcggacacgtgtcgtgtccaacaccgaca 19629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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