View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14046_low_30 (Length: 227)

Name: NF14046_low_30
Description: NF14046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14046_low_30
NF14046_low_30
[»] chr5 (11 HSPs)
chr5 (1-207)||(10218131-10218338)
chr5 (16-167)||(10664558-10664710)
chr5 (1-153)||(10661470-10661623)
chr5 (105-177)||(10764622-10764694)
chr5 (1-72)||(10653584-10653655)
chr5 (27-177)||(10603400-10603551)
chr5 (24-169)||(10610365-10610511)
chr5 (24-175)||(10748423-10748575)
chr5 (16-154)||(7191675-7191814)
chr5 (25-155)||(10557589-10557720)
chr5 (30-150)||(10549467-10549588)
[»] chr6 (4 HSPs)
chr6 (14-72)||(12956834-12956892)
chr6 (16-174)||(12905840-12905999)
chr6 (17-155)||(12930948-12931087)
chr6 (17-52)||(12947417-12947452)
[»] chr2 (2 HSPs)
chr2 (105-174)||(17924893-17924962)
chr2 (16-72)||(17924803-17924859)


Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 10218131 - 10218338
Alignment:
Q  1 caacatatagctcaataagttcagtggataaattgcctatgaaatttggcaagttgcctccaaaattgttattgtttatagaaagcacttgcaacttagt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10218131 caacatatagctcaataagttcagtggataaattgcctatgaaatttggcaagttgcctccaaaattgttattgtttatagaaagcacttgcaacttagt 10218230  T
Q  101 ataa-ttgtcaaagattttaaaaactccaaatcctttgttgaattgtcacctaaatagttgtattccaaatttagcaatagtagatcttttagccatcct 199  Q
    | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||    
T  10218231 acaatttgtcaaagattttaaaaactccaaatcctttgttgaattgtcacctaaatagttgtattccaaacttagcaatagtagatcatttagccatcct 10218330  T
Q  200 agagttgg 207  Q
    ||||||||    
T  10218331 agagttgg 10218338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 16 - 167
Target Start/End: Original strand, 10664558 - 10664710
Alignment:
Q  16 taagttcagtggataaattgcctatgaaatttggcaagttgcctccaaaattgttattgtttatagaaagcacttgcaacttagtataatt-gtcaaaga 114  Q
    |||||| | ||||||||||||||| |||||||| ||| ||| |||||||||| ||||||  |||||||| |||||| |   || || |||| ||||| ||    
T  10664558 taagttgattggataaattgcctacgaaatttgtcaatttggctccaaaattattattgcatatagaaatcacttgtagtctactacaattcgtcaagga 10664657  T
Q  115 ttttaaaaactccaaatcctttgttgaattgtcacctaaatagttgtattcca 167  Q
     ||||| |||||||||||||| ||||| ||||||||||||  |||| ||||||    
T  10664658 ctttaagaactccaaatccttagttgagttgtcacctaaactgttgaattcca 10664710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 10661470 - 10661623
Alignment:
Q  1 caacatatagctcaataagttcagtggataaattgcctatgaaatttggcaagttgcctccaaaattgttattgtttatagaaagcacttgcaacttagt 100  Q
    |||||||||||| | |||||| |||||||||||||||||  |||||||||||||| || |||||||  ||| ||  |||||||| ||||   |  |||||    
T  10661470 caacatatagctgactaagttgagtggataaattgcctacaaaatttggcaagttacccccaaaatgattactggatatagaaatcactcttagtttagt 10661569  T
Q  101 -ataattgtcaaagattttaaaaactccaaatcctttgttgaattgtcacctaa 153  Q
     |   ||||||| | ||| ||||||||||||||||| |||||||||||||||||    
T  10661570 gaagtttgtcaaggttttcaaaaactccaaatccttagttgaattgtcacctaa 10661623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 105 - 177
Target Start/End: Original strand, 10764622 - 10764694
Alignment:
Q  105 ttgtcaaagattttaaaaactccaaatcctttgttgaattgtcacctaaatagttgtattccaaatttagcaa 177  Q
    |||||||| ||||||||||||| |||||| |||| |||||||||||||||| ||| | |||||||||||||||    
T  10764622 ttgtcaaatattttaaaaactctaaatccattgtggaattgtcacctaaattgttttcttccaaatttagcaa 10764694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 10653584 - 10653655
Alignment:
Q  1 caacatatagctcaataagttcagtggataaattgcctatgaaatttggcaagttgcctccaaaattgttat 72  Q
    |||||||||||| | |||||| |||||||||||||||||  |||||||||||||| ||||||||||| ||||    
T  10653584 caacatatagctgactaagttgagtggataaattgcctacaaaatttggcaagttacctccaaaattattat 10653655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 27 - 177
Target Start/End: Complemental strand, 10603551 - 10603400
Alignment:
Q  27 gataaattgcctatgaaatttggcaagttgcctccaaaattgttattgtttatagaaagcacttgcaacttagtataatt-gtcaaagattttaaaaact 125  Q
    |||||||| |||||  ||||| ||||  | ||||||||||| |||||| ||| ||| ||   |||||||||| || | || ||||| |||||||||||||    
T  10603551 gataaatttcctatagaattttgcaaactacctccaaaattattattggttaaagatagtgattgcaacttactacagtttgtcaatgattttaaaaact 10603452  T
Q  126 ccaaatcctttgttgaattgtcacctaaatagttgtattccaaatttagcaa 177  Q
    |||||||  ||||||| ||||||||||||  |||   |||||||||||||||    
T  10603451 ccaaatcaattgttgagttgtcacctaaaatgttcatttccaaatttagcaa 10603400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 24 - 169
Target Start/End: Complemental strand, 10610511 - 10610365
Alignment:
Q  24 gtggataaattgcctatgaaatttggcaagttgcctccaaaattgttattgtttatagaaagcacttgcaacttagtataatt-gtcaaagattttaaaa 122  Q
    |||||||||||||| ||||||||||||||  | |||||||| || |||||   ||||||||||  ||  |  ||| || | || |||||| |||||||||    
T  10610511 gtggataaattgccaatgaaatttggcaaactacctccaaacttattattagatatagaaagcttttctagtttactacagtttgtcaaatattttaaaa 10610412  T
Q  123 actccaaatcctttgttgaattgtcacctaaatagttgtattccaaa 169  Q
    |||| |||||  | |||||||||| ||| ||||||||||||||||||    
T  10610411 actctaaatctatagttgaattgttaccgaaatagttgtattccaaa 10610365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 175
Target Start/End: Original strand, 10748423 - 10748575
Alignment:
Q  24 gtggataaattgcctatgaaatttggcaagttgcctccaaaattgttattgtttatagaaagcacttgcaacttagtataatt-gtcaaagattttaaaa 122  Q
    ||||||||| |||| ||| ||||||||||  | |||||||| || |||||   |||||||| |||||  |  ||| || |||| |||||| | |||||||    
T  10748423 gtggataaactgccaatggaatttggcaaactacctccaaacttattattacatatagaaaccacttctagtttactacaatttgtcaaatactttaaaa 10748522  T
Q  123 actccaaatcctttgttgaattgtcacctaaatagttgtattccaaatttagc 175  Q
    |||| |||||  | |||||||||| ||| |||||||||| |||||||||||||    
T  10748523 actctaaatcgatagttgaattgttaccgaaatagttgtcttccaaatttagc 10748575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 154
Target Start/End: Complemental strand, 7191814 - 7191675
Alignment:
Q  16 taagttcagtggataaattgcctatgaaatttggcaagttgcctccaaaattgttattgtttatagaaagcacttgcaacttagtataatt-gtcaaaga 114  Q
    |||||| |||||||||||| || ||| |||||||||| || ||||||||||| |||  |  |||||||| |||| | |  ||| || | || ||||| ||    
T  7191814 taagttgagtggataaattcccaatggaatttggcaaattacctccaaaattattaaaggatatagaaaacactagtagtttactacagtttgtcaagga 7191715  T
Q  115 ttttaaaaactccaaatcctttgttgaattgtcacctaaa 154  Q
    |||||||||||| |||||||| || ||||||| |||||||    
T  7191714 ttttaaaaactctaaatccttagtggaattgttacctaaa 7191675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 155
Target Start/End: Complemental strand, 10557720 - 10557589
Alignment:
Q  25 tggataaattgcctatgaaatttggcaagttgcctccaaaattgttattgtttatagaaagcacttgcaacttagtataatt-gtcaaagattttaaaaa 123  Q
    ||||||||||||||   |||||||||||  | ||||||||||| |||| |  |||||||  ||||||||||||| || | || ||||| |||||||||||    
T  10557720 tggataaattgcctgccaaatttggcaaactacctccaaaattattatgggatatagaacacacttgcaacttactacagttagtcaatgattttaaaaa 10557621  T
Q  124 ctccaaatcctttgttgaattgtcacctaaat 155  Q
       ||||||||| |||||||| ||||| ||||    
T  10557620 aatcaaatccttagttgaattttcaccaaaat 10557589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 150
Target Start/End: Complemental strand, 10549588 - 10549467
Alignment:
Q  30 aaattgcctatgaaatttggcaagttgcctccaaaattgttattgtttatagaaagcacttgcaacttagtataatt-gtcaaagattttaaaaactcca 128  Q
    ||||| ||||||||| |||||||  | ||||||||||| |||| |  ||||||||   ||||||| ||| || |||| ||||| | ||||||||| || |    
T  10549588 aaattacctatgaaacttggcaaactacctccaaaattattatgggatatagaaaatgcttgcaaattactacaatttgtcaatggttttaaaaattcta 10549489  T
Q  129 aatcctttgttgaattgtcacc 150  Q
    ||||||| ||||||||||||||    
T  10549488 aatccttagttgaattgtcacc 10549467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 14 - 72
Target Start/End: Complemental strand, 12956892 - 12956834
Alignment:
Q  14 aataagttcagtggataaattgcctatgaaatttggcaagttgcctccaaaattgttat 72  Q
    ||||||||||||||||||||| |||||| |||||||||| | |||||||||||| ||||    
T  12956892 aataagttcagtggataaattccctatggaatttggcaaatggcctccaaaattattat 12956834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 174
Target Start/End: Complemental strand, 12905999 - 12905840
Alignment:
Q  16 taagttcagtggataaattgcctatgaaatttggcaagttgcctccaaaattgttattgtttatagaaagcacttgcaacttagtataatt-gtcaaaga 114  Q
    ||||||||||||| || ||||||||| |||||||||| |  ||||||||||| |||   | ||| |||||||| |  |  ||| |  |||| |||||| |    
T  12905999 taagttcagtggaaaagttgcctatggaatttggcaaatgtcctccaaaattattagaatctattgaaagcacgtatagtttactgcaatttgtcaaata 12905900  T
Q  115 ttttaaaaactccaaatcctttgttgaattgtcacctaaatagttgtattccaaatttag 174  Q
    |||||||||||| |||||||| |||||| ||| |||||||| |||| || ||||| ||||    
T  12905899 ttttaaaaactctaaatccttagttgaaatgttacctaaattgttgaatcccaaacttag 12905840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 155
Target Start/End: Complemental strand, 12931087 - 12930948
Alignment:
Q  17 aagttcagtggataaattgcctatgaaatttggcaagttgcctccaaaattgttattgtttatagaaagcacttgcaacttagtataa-ttgtcaaagat 115  Q
    ||||||||| ||||||||||||||| |||||||||| |  ||||||||||| ||||    ||| |||||||| |  |  ||| |  || |||||||| ||    
T  12931087 aagttcagtcgataaattgcctatggaatttggcaaatgacctccaaaattattataagatatcgaaagcacgtatagtttactgcaatttgtcaaatat 12930988  T
Q  116 tttaaaaactccaaatcctttgttgaattgtcacctaaat 155  Q
    ||||||||||| |||||| | |||||||||| ||||||||    
T  12930987 tttaaaaactctaaatccatagttgaattgttacctaaat 12930948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 52
Target Start/End: Complemental strand, 12947452 - 12947417
Alignment:
Q  17 aagttcagtggataaattgcctatgaaatttggcaa 52  Q
    ||||||||||||||||||||||||| ||||||||||    
T  12947452 aagttcagtggataaattgcctatggaatttggcaa 12947417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 105 - 174
Target Start/End: Original strand, 17924893 - 17924962
Alignment:
Q  105 ttgtcaaagattttaaaaactccaaatcctttgttgaattgtcacctaaatagttgtattccaaatttag 174  Q
    |||||||| ||||||||||||| |||||| | |||||||| |||||||||| ||| | ||||||||||||    
T  17924893 ttgtcaaatattttaaaaactctaaatccatagttgaattatcacctaaattgttttcttccaaatttag 17924962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 17924803 - 17924859
Alignment:
Q  16 taagttcagtggataaattgcctatgaaatttggcaagttgcctccaaaattgttat 72  Q
    ||||||||||||||||||| |||||| |||||||||| |  ||||||||||| ||||    
T  17924803 taagttcagtggataaattccctatggaatttggcaaatgacctccaaaattattat 17924859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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