View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14046_low_4 (Length: 604)
Name: NF14046_low_4
Description: NF14046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14046_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 510; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 14 - 588
Target Start/End: Complemental strand, 9496562 - 9495987
Alignment:
| Q |
14 |
atgtgctgggggaagagcagaaatcgaaactttttgcaaccgaaactatatgagttgtaaattagatatcggatgaggtctatccatgtattgggacttg |
113 |
Q |
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| T |
9496562 |
atgtgctggggaaagagcagaaatcgaaactttttgcaaccgaaactatatgagttgtaaattagatatcggatgaggtctatccatgtattgggacttg |
9496463 |
T |
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| Q |
114 |
agaggctaagatcttgtnnnnnnnnnnnnnnnnnn-tactacggttattgaagcttgatagacacacacatcaatatcaaataatatcattttataagct |
212 |
Q |
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| T |
9496462 |
agaggctaagatcttgtaaaaaaaaggttaaaaaaatactacggttattgaagcttgatagacacacacatcaatatcaaataatatcattttataagct |
9496363 |
T |
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| Q |
213 |
ttaacaacaacaaatgaagaacacccccacaaaaaacaaattaaaatgaagtacatcatttgaacaagaagaaatttcataaaaaacattaatgcataat |
312 |
Q |
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| T |
9496362 |
ttaacaacaacaaatgaagaacacccccacaaaaaacaaattaaaatgaagtacatcatttgaacaagaagaaatttcataaaaaacattaatgcataat |
9496263 |
T |
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| Q |
313 |
ccttcaattagttaattttaataaattcagataaagtccaaaaactacatatctttaaatctaatatctaaaatttagaatcaatttcctaaataaaata |
412 |
Q |
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| T |
9496262 |
ccttcaattagttaattttaataaattcagataaagtccaaaaactacatatctttaaatctaatatctaaaatttagaatcaatttcctaaataaaata |
9496163 |
T |
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| Q |
413 |
ttatgtagcactgtttaataaaagtttgcaaacagagcagaataaaaagaggacaaaaatgctagattcatctatgtattatatcatactctttccatac |
512 |
Q |
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| T |
9496162 |
ttatgtagcactgtttaataaaagtttgcaaacagagcagaataaaaagaggacaaaaatgctagattcatctatgtattatatcatactctttccatac |
9496063 |
T |
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| Q |
513 |
agaatttggttgtaacaagatcaacaatgtacttttataatctttaatacacatgtagaatatagtccatattaac |
588 |
Q |
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| T |
9496062 |
agaatttggttgtaacaagatcaacaatgtacttttataatctttaatacacatgtagaatatagtccatattaac |
9495987 |
T |
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