View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14046_low_5 (Length: 534)
Name: NF14046_low_5
Description: NF14046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14046_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 282; Significance: 1e-158; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 10 - 515
Target Start/End: Complemental strand, 15921494 - 15920988
Alignment:
| Q |
10 |
tcgaagaatataaggtgtgacatcattgaacnnnnnnntaggaagtcttagttctccactaaaccatttagacttgaacgaaatgttactccagttccac |
109 |
Q |
| |
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||||| || |||||||||||| ||||| ||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15921494 |
tcgaaaaaaataaggtgtgacgtcattaaacaaaaacataggaagccttaattctccactaaaccatttagacttgaacgaaatgttactccagttccac |
15921395 |
T |
|
| Q |
110 |
tcatccgtcttatttgctaccactcgaattcctgctgtctttagatcccgtatgctcttataagtattccaattcgaattaatttcttccttatccctgt |
209 |
Q |
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||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||| ||| |||| |
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| T |
15921394 |
tcatctgtcttatttgctaccactcgaattcctactgtttttagatcccgtatgctcttataagtattccaattaaaattaatatcttcctcatcactgt |
15921295 |
T |
|
| Q |
210 |
cttcttggtcttgatttgta-tttttccgcatcgaattatgttcacctccttcaaactgtgtttccatttggccatgttcttcgatgttggaaaacttat |
308 |
Q |
| |
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|||||||||||||| ||||| ||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||| |||||| |||||||| ||| | |
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| T |
15921294 |
cttcttggtcttgagttgtattttttccgcattgaactatgttcacctccttccaactgtgtttccatttggccatgtccttcgacgttggaaacctttt |
15921195 |
T |
|
| Q |
309 |
tgcgtgacaagtactctgagcgagcaaaatcgagtagatgaaagggcttaggattttccaattgaaccacttccattccttctcgtttatattcacccaa |
408 |
Q |
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|| ||||||||||| ||| ||||||||||||||||||||| ||||||||| ||||||||||||||||| | ||||||| ||||||| | |||||| |
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| T |
15921194 |
tgggtgacaagtacaatgaacgagcaaaatcgagtagatgacagggcttagtattttccaattgaaccattaccattccgcatcgtttacctcgacccaa |
15921095 |
T |
|
| Q |
409 |
actatcataattgttaattaaaaatcccaaatcaaaacccgcttcttcgcatagaatctcaagcattattcttggaagttgattctccaacaataaagta |
508 |
Q |
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| T |
15921094 |
attatcataattgttaattaaaaatcccaaatcataacccgcttctttgcatagaatctcaagcattttgtttggaagctggttctctaacaaattagta |
15920995 |
T |
|
| Q |
509 |
tctctcc |
515 |
Q |
| |
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||||||| |
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| T |
15920994 |
tctctcc |
15920988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 10 - 515
Target Start/End: Original strand, 15873603 - 15874109
Alignment:
| Q |
10 |
tcgaagaatataaggtgtgacatcattgaacnnnnnnntaggaagtcttagttctccactaaaccatttagacttgaacgaaatgttactccagttccac |
109 |
Q |
| |
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||||| || |||||||||||| ||||||||| ||||||| |||||||||||| |||||||||||||| |||||||||||||||||||||||||| |
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| T |
15873603 |
tcgaaaaaaataaggtgtgacgtcattgaacaaaaaaataggaagccttagttctccattaaaccatttagacgtgaacgaaatgttactccagttccac |
15873702 |
T |
|
| Q |
110 |
tcatccgtcttatttgctaccactcgaattcctgctgtctttagatcccgtatgctcttataagtattccaattcgaattaatttcttccttatccctgt |
209 |
Q |
| |
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||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| | | |
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| T |
15873703 |
tcatctgtcttatttgctaccacttgaattcctactgtctttagatcccgtatgctcttataagtattccaattcaaattaatttcttcctcatcaatat |
15873802 |
T |
|
| Q |
210 |
cttcttggtcttgatttgtatttttccgcatcgaattatgttcacctccttcaaactgtgtttccatttggccatgttcttcgatgttggaaaacttatt |
309 |
Q |
| |
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|||||||||||||| || ||||||||| ||||||||| ||||||| ||||||| | ||||||||||||| ||||||||||| |||||||||| | |||| |
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| T |
15873803 |
cttcttggtcttgagttttatttttcctcatcgaattgtgttcacttccttcagattgtgtttccattttaccatgttcttcaatgttggaaaccatatt |
15873902 |
T |
|
| Q |
310 |
gcgtgacaagtactctgagcgagcaaaatcgagtagatgaaagggcttaggattttccaattgaaccacttccattccttctcgtttatattcacccaaa |
409 |
Q |
| |
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| ||| ||||||| |||| ||||||||||| |||| |||||||||||||||||||||||||| || | | ||||||| |||||| ||||||||| | |
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| T |
15873903 |
gggtggcaagtacactgaacgagcaaaatcaagtatatgaaagggcttaggattttccaatttgactattaccattccaagtcgtttggattcacccata |
15874002 |
T |
|
| Q |
410 |
ctatcataattgttaattaaaaatcccaaatcaaaacccgcttcttcgcatagaatctcaagcattattctt-ggaagttgattctccaacaataaagta |
508 |
Q |
| |
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| | ||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
15874003 |
tcaaaagaattgttaattaaaaattccaaatcaatacccatttcttcgcatagaatctcaagcattattcttgggaagttgattctccaacaataaagta |
15874102 |
T |
|
| Q |
509 |
tctctcc |
515 |
Q |
| |
|
||||||| |
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|
| T |
15874103 |
tctctcc |
15874109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 48 - 515
Target Start/End: Complemental strand, 15900406 - 15899960
Alignment:
| Q |
48 |
taggaagtcttagttctccactaaaccatttagacttgaacgaaatgttactccagttccactcatccgtcttatttgctaccactcgaattcctgctgt |
147 |
Q |
| |
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||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||| |||||| ||| |||||||||||||||||| |||||||| |||| |
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| T |
15900406 |
taggaagccttagttcgccactaaaccatttagacttgaaagaaatgttactccaggtccacttatctgtcttatttgctaccacttgaattcctactgt |
15900307 |
T |
|
| Q |
148 |
ctttagatcccgtatgctcttataagtattccaattcgaattaatttcttccttatccctgtcttcttggtcttgatttgtatttttccgcatcgaatta |
247 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||| ||||||| |||||| || |||| ||||||||| |||||||||| | | ||| |
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| T |
15900306 |
ttttagatcccgtatgctcttataagtattccaattgaaatcaatttctggcttatcactatctttttggtcttgctttgtatttt------ttggattg |
15900213 |
T |
|
| Q |
248 |
tgttcacctccttcaaactgtgtttccatttggccatgttcttcgatgttggaaaacttattgcgtgacaagtactctgagcgagcaaaatcgagtagat |
347 |
Q |
| |
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||||||| | ||||| | ||| ||||||||||| |||||||||| | ||||| | | |||| |||| ||| ||||||| |||| || |
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| T |
15900212 |
tgttcactttcttcatattgtttttccatttgggcatgttcttcaaagttggga---------------acgtacactgaacgaccaaaatcaagtaaat |
15900128 |
T |
|
| Q |
348 |
gaaagggcttaggattttccaattgaaccacttccattccttctcgtttatattcacccaaactatcataattgttaattaaaaatcccaaatcaaaacc |
447 |
Q |
| |
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||||||||||| ||||||||||||| | || | ||||||| |||||| || |||||| | | |||||||||||||||| ||||||||| || |
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| T |
15900127 |
gaaagggcttatgattttccaattggagcattgccattccaagtcgtttgcatgcacccattgcaaaagaattgttaattaaaaaatccaaatcaacact |
15900028 |
T |
|
| Q |
448 |
cgcttcttcgcatagaatctcaagcattattcttggaagttgattctccaacaataaagtatctctcc |
515 |
Q |
| |
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|| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |
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| T |
15900027 |
cgtttcttcgcatagaatctcaagcattatttttggaagttgattctccaacaaaaaagtatctctcc |
15899960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 10 - 183
Target Start/End: Original strand, 14060016 - 14060189
Alignment:
| Q |
10 |
tcgaagaatataaggtgtgacatcattgaacnnnnnnntaggaagtcttagttctccactaaaccatttagacttgaacgaaatgttactccagttccac |
109 |
Q |
| |
|
||||| || |||||||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||| |||| ||||||||| |||| |
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|
| T |
14060016 |
tcgaaaaaaataaggtgtgacatcattgaacaaaaaaataggaagtcttagttctccactcaaccacttagacttgaaagaaacgttactccatgtccat |
14060115 |
T |
|
| Q |
110 |
tcatccgtcttatttgctaccactcgaattcctgctgtctttagatcccgtatgctcttataagtattccaatt |
183 |
Q |
| |
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|||| |||||||||| | ||||||||||||| | | |||||||||| |||||| ||||||||||||||||| |
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|
| T |
14060116 |
gcatctgtcttatttggtttcactcgaattcctattatttttagatcccttatgcttttataagtattccaatt |
14060189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 10 - 180
Target Start/End: Original strand, 14048645 - 14048815
Alignment:
| Q |
10 |
tcgaagaatataaggtgtgacatcattgaacnnnnnnntaggaagtcttagttctccactaaaccatttagacttgaacgaaatgttactccagttccac |
109 |
Q |
| |
|
||||| || |||||| ||||||||||||||| ||||||||| |||||||||||| ||||| ||||||||||| |||| ||||||||| |||| |
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| T |
14048645 |
tcgaaaaaaataaggcgtgacatcattgaacaaaaaaataggaagtcgtagttctccactcaaccacttagacttgaaggaaacgttactccatgtccat |
14048744 |
T |
|
| Q |
110 |
tcatccgtcttatttgctaccactcgaattcctgctgtctttagatcccgtatgctcttataagtattcca |
180 |
Q |
| |
|
|||| |||||||||| | ||||||||||||| | | |||||||||| |||||| |||||||||||||| |
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|
| T |
14048745 |
gcatctgtcttatttggtttcactcgaattcctaccatttttagatcccttatgcttttataagtattcca |
14048815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 48 - 109
Target Start/End: Original strand, 15880450 - 15880511
Alignment:
| Q |
48 |
taggaagtcttagttctccactaaaccatttagacttgaacgaaatgttactccagttccac |
109 |
Q |
| |
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||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
15880450 |
taggaagccttagttctccattaaaccatttagacttgaacgaaatgttactccagttccac |
15880511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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