View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14046_low_6 (Length: 486)
Name: NF14046_low_6
Description: NF14046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14046_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 1 - 472
Target Start/End: Complemental strand, 27438683 - 27438220
Alignment:
| Q |
1 |
tcatcaagtcaattaaatagacaaatgagtacataaaaaagtacacagttcattttgtattgtagttaaattattgttgttggagataggcttgagtgag |
100 |
Q |
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| T |
27438683 |
tcatcaagtcaattaaatagacaaatgagtacataaaaaagtacacagttcattttgtattgtagttaaattattgttgttggagataggcttgagtgag |
27438584 |
T |
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| Q |
101 |
attgaaaatcgacttttgacgacgtggaagcctaatccattgatatctatttcttgtaataaatatattccaacttgtcttgaaactgaccaatgagaca |
200 |
Q |
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| T |
27438583 |
attgaaaatcgacttttgacgacgtggaagcctaatccattgatatctatttcttgtaataaatatattccaacttgtcttgaaactgaccaatgagaca |
27438484 |
T |
|
| Q |
201 |
ataaaagtgatttaatttaatgtgaagattttaattgttttgttttgcaagatataatgatatgcatctaagaaggaaggaggaaaaggaataaaagaca |
300 |
Q |
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| T |
27438483 |
ataaaagtgatttaatttaatgtgaagattttaattg-tttgttttgcaagatataatgatatgcatctaagaaggaaggaggaaaaggaataaaagaca |
27438385 |
T |
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| Q |
301 |
aaagatgagtgggaatcaaacttgtcttatatattattatccctgtaattgacataacaaagcaaagtgacataaatggttttggtgttaagttgagaaa |
400 |
Q |
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| T |
27438384 |
aaagatgagtgggaatcaaacttgtc-------ttattgtccctgtaattgacataacaaagcaaagtgacataaatggttttggtgttgagttgagcaa |
27438292 |
T |
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| Q |
401 |
acttatgattgaccattatgagaatggttttactggtaccatgaaagtaacataggaagcctcgttcatgct |
472 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27438291 |
acttatgattgaccattatgagaatggttttactggtaccatgaaagtaacataggaagcctcgttcatgct |
27438220 |
T |
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