View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14047_high_5 (Length: 227)
Name: NF14047_high_5
Description: NF14047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14047_high_5 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 167; Significance: 1e-89; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 6 - 227
Target Start/End: Original strand, 42450035 - 42450265
Alignment:
| Q |
6 |
actctccacctcaatacagcattagcaacggcatttactgcatgatcttgtcccactactcttttgtgtaacctgtcaccaagtccaagaaacatttctt |
105 |
Q |
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| T |
42450035 |
actctccgcctcaatacagtgttagcaacggcatttactgcatgatcttgtcccactactcttttgtgtaacctgtcaccaagtccaagaaacctttctt |
42450134 |
T |
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| Q |
106 |
tctcattttcgccaagtcgggacactggtatacccgtcaataggctaacaaccaaagctattaggtctgg---------ttttgtcaacatcaagctctt |
196 |
Q |
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| T |
42450135 |
tctcattttcactaagtcgggacactggtatacccgtcaataggctaacaaccaaacctattaggtctggttcaacagtttttgtcaacatcaagctttt |
42450234 |
T |
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| Q |
197 |
atcggtgctatcttcaagtcgttgaattgca |
227 |
Q |
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| T |
42450235 |
atcggtgctatcttcaagtcgttgaattgca |
42450265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 7 - 171
Target Start/End: Original strand, 742780 - 742944
Alignment:
| Q |
7 |
ctctccacctcaatacagcattagcaacggcatttactgcatgatcttgtcccactactcttttgtgtaacctgtcaccaagtccaagaaacatttcttt |
106 |
Q |
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| T |
742780 |
ctctccaccttaatacagcgttagcaacgtcatttactgcttgatcttgtcccacaactctattatgcaacctgtcaccaattccaagaaacctttcttt |
742879 |
T |
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| Q |
107 |
ctcattttcgccaagtcgggacactggtatacccgtcaataggctaacaaccaaagctattaggt |
171 |
Q |
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| T |
742880 |
ctcattttcgccaatttgggtcactggtatgccggtcaataggctaacaaccatagcaattaggt |
742944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 15 - 158
Target Start/End: Complemental strand, 45467843 - 45467700
Alignment:
| Q |
15 |
ctcaatacagcattagcaacggcatttactgcatgatcttgtcccactactcttttgtgtaacctgtcaccaagtccaagaaacatttctttctcatttt |
114 |
Q |
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| T |
45467843 |
ctcaatacagcctcagcaacagcattaaccgcttggtcttgtcccacgactctagtgtgcagtctgtcaccaagtccaaccaaccttgctttctcatttt |
45467744 |
T |
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| Q |
115 |
cgccaagtcgggacactggtatacccgtcaataggctaacaacc |
158 |
Q |
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| T |
45467743 |
ggccgagcctagtcactggtataccagtccatcggctaacaacc |
45467700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 158
Target Start/End: Complemental strand, 10045963 - 10045847
Alignment:
| Q |
42 |
actgcatgatcttgtcccactactcttttgtgtaacctgtcaccaagtccaagaaacatttctttctcattttcgccaagtcgggacactggtatacccg |
141 |
Q |
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| T |
10045963 |
actgcttggtcttgtcccacaactctagtatgcaatctgtctccaagtccaaccaacctttctttatcattttggcctaaacgagtcactggtataccgg |
10045864 |
T |
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| Q |
142 |
tcaataggctaacaacc |
158 |
Q |
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| T |
10045863 |
tccatcggctaacaacc |
10045847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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