View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14047_low_3 (Length: 406)
Name: NF14047_low_3
Description: NF14047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14047_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 290; Significance: 1e-162; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 9 - 363
Target Start/End: Original strand, 29967390 - 29967738
Alignment:
| Q |
9 |
atgcttaaacgaaacgtgtggtgtcggctgagtatcaaagattctgaaatgaaatgaaatgaaatgaaattattagttccaattaaacaacacaagttag |
108 |
Q |
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| T |
29967390 |
atgcttaaacgaaacgtgtggtgtcgtctgagtatcaaagattctgaa----------atgaaatgaaattattagttccaattaaacaacacaagttag |
29967479 |
T |
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| Q |
109 |
ttaccgttactttatg----ataacttacggaagagggtaaccagaggttaaattagtttctgagaagagaatagagtgaaagtgtataggctggtgagt |
204 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29967480 |
ttaccgttactttatgatatataacttacggaagagggtaaccagaggttaaattagtttctgagaagagaatagagtgaaagtgtataggctggtgagt |
29967579 |
T |
|
| Q |
205 |
ctgaagaaaatgagcccagagttcgttatcggagacgagagatcgccatgacttgcaaacgaggcagagtttggcagcatgtttagggcttaatagtctt |
304 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
29967580 |
ctgaagaaaatgagcccagagttcgttatcggagacgagagatcgccatgacttgcaaacgaggcagagtttggcagcatgtttagggcctaatagtctt |
29967679 |
T |
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| Q |
305 |
gtgattttgaggagtatttcaggagggagtgagtcaaataaacccaaaggactcggagc |
363 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
29967680 |
gtgattttgaggagtatgtcaggagggagtgagtcaaataaacccaaaggactcggagc |
29967738 |
T |
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