View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14047_low_5 (Length: 248)
Name: NF14047_low_5
Description: NF14047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14047_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 8724616 - 8724848
Alignment:
| Q |
1 |
aaagtaaatgttaacgggttcatgagatgcatgataaaagattgactttgtaacctcggagtacaagttcaaatctgatatgagacattataaaatgttg |
100 |
Q |
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| T |
8724616 |
aaagtaaatgttaacgggttcatgagatgcatgataaaagattgactttgtaacctcggagtacaagttcaaatctgatatgagacattataaaatgttg |
8724715 |
T |
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| Q |
101 |
attatcatccaaattttgtagaggacttttgttttatgtcgcctgatgaagaaatttgagaaaaataccgaagaggagctggatacaatgatatgtgacg |
200 |
Q |
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| T |
8724716 |
attatcatccaaattttgtagaggacttttgttttatgtcgcctgatgaagaaatttgagaaaaataccgaagaggagctggatacaatgatatgtgacg |
8724815 |
T |
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| Q |
201 |
aaggggagtcgagtagacacatgagctcttact |
233 |
Q |
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| T |
8724816 |
aaggggagtcgagtagacacatgagttcttact |
8724848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 92 - 229
Target Start/End: Original strand, 8744548 - 8744685
Alignment:
| Q |
92 |
aaaatgttgattatcatccaaattttgtagaggacttttgttttatgtcgcctgatgaagaaatttgagaaaaataccgaagaggagctggatacaatga |
191 |
Q |
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| T |
8744548 |
aaaatgttgattattgtccaaattttgtagaggacttttgttttatgtcgcttgatgaagaaagctgagaaaaatactgaagaggaattggatacaatga |
8744647 |
T |
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| Q |
192 |
tatgtgacgaaggggagtcgagtagacacatgagctct |
229 |
Q |
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| T |
8744648 |
tatgtgatgtaggggagtcaagtagacacatgagctct |
8744685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 92 - 225
Target Start/End: Original strand, 8691265 - 8691399
Alignment:
| Q |
92 |
aaaatgttgattatcatccaaa-ttttgtagaggacttttgttttatgtcgcctgatgaagaaatttgagaaaaataccgaagaggagctggatacaatg |
190 |
Q |
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||||||||||||||| |||||| |||||||||||||||||||||| |||||| ||||||||||| ||||||||| | |||||||| | |||| |||| |
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| T |
8691265 |
aaaatgttgattatcctccaaaattttgtagaggacttttgttttgtgtcgcttgatgaagaaagctgagaaaaaagctgaagaggaaattgatagaatg |
8691364 |
T |
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| Q |
191 |
atatgtgacgaaggggagtcgagtagacacatgag |
225 |
Q |
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| T |
8691365 |
atatgtgatgaaggggagcctagtcgacacatgag |
8691399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 93 - 163
Target Start/End: Complemental strand, 14372024 - 14371953
Alignment:
| Q |
93 |
aaatgttgattatcatcc-aaattttgtagaggacttttgttttatgtcgcctgatgaagaaatttgagaaa |
163 |
Q |
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| T |
14372024 |
aaatgctgattatcatccgaaattttgtagaggacttttgttttatgtcgcttgatgaagaaagctgagaaa |
14371953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 111 - 165
Target Start/End: Original strand, 8705948 - 8706002
Alignment:
| Q |
111 |
aaattttgtagaggacttttgttttatgtcgcctgatgaagaaatttgagaaaaa |
165 |
Q |
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| T |
8705948 |
aaattttgtagaggacttttgttttatgtcgcttgatgaagaaagctgagaaaaa |
8706002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 111 - 208
Target Start/End: Original strand, 8723276 - 8723373
Alignment:
| Q |
111 |
aaattttgtagaggacttttgttttatgtcgcctgatgaagaaatttgagaaaaataccgaagaggagctggatacaatgatatgtgacgaaggggag |
208 |
Q |
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|||||||||||||||||||||||||||||||| ||||||| ||| |||| ||| ||||||||| ||||||||||| ||||| ||||||||| |
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| T |
8723276 |
aaattttgtagaggacttttgttttatgtcgcttgatgaaaaaagccgagataaaaggcgaagaggaaaatgatacaatgatgtgtgatgaaggggag |
8723373 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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