View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14047_low_6 (Length: 227)
Name: NF14047_low_6
Description: NF14047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14047_low_6 |
 | |
|
| [»] chr8 (2 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 8724401 - 8724175
Alignment:
| Q |
1 |
ttaagaaaccaatagaatatgtattggaaggtattacttcatctagtaaacaaccaagatttccagtcatagataatagaataaagttagttacaccaaa |
100 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
8724401 |
ttaagaaaccaatagaatatatattggaaggtattacttcatctagtaaacaaccaagattaccagtcatagataatagaatagagttagttacaccaaa |
8724302 |
T |
|
| Q |
101 |
ataagctagttcaaagttagttataattggttacttgtgatccaagtcacctagctcttttcacttatatatttatgaatcttgaaactaactttcagtt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8724301 |
ataagctagttcaaagttagttataattggttacttgtgatccaagtcacctagctcttttcacttatatatttatgaatcttgaaactaactttcagtt |
8724202 |
T |
|
| Q |
201 |
tagatcattcattccaatatctgagat |
227 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
8724201 |
tagatcattcattccaatatctgagat |
8724175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 85 - 126
Target Start/End: Complemental strand, 22467542 - 22467501
Alignment:
| Q |
85 |
agttagttacaccaaaataagctagttcaaagttagttataa |
126 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
22467542 |
agttagttacaccaaaataagcttgttcaaagttagttataa |
22467501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University