View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14048_high_1 (Length: 829)
Name: NF14048_high_1
Description: NF14048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14048_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 617; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 617; E-Value: 0
Query Start/End: Original strand, 60 - 762
Target Start/End: Complemental strand, 35450161 - 35449459
Alignment:
| Q |
60 |
ttataattactatgatcacttattaattaagttgttgcagcagttaatagattcatttcaagccttccattctctattactaagtttctttttccccttc |
159 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35450161 |
ttataattactatgatcacttattaattaagttgttgcagcagttaatagattcatttcaagccttccattctctattactaagtttctttttccccttc |
35450062 |
T |
|
| Q |
160 |
atcttttcagtttggcaaaggcttgaagaacaaaatccagagttcttccaagcttactatacaagattggcgttgaagaagcaaatagaggaattcaaca |
259 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35450061 |
atcttttcagtttggcaaaggcttgaagaacaaaatccagagttcttccaagcttactatacaagattggcgttgaagaagcaaatagaggaattcaaca |
35449962 |
T |
|
| Q |
260 |
aattaatgcataaacaaaaggaattaatggtctcagagcaagctaaagttgcatcactaccaacctctaatggatttcattatcatgatgtttcatcgct |
359 |
Q |
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|
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
35449961 |
aattaatgcataaacaaaaggaattaatagactcagagcaagctaaagttgcatcactacctacctctaatggatttcattatcatgatgtttcatcgct |
35449862 |
T |
|
| Q |
360 |
acccacttctaatggaacacctacccccgctagtaagtttctacctccaaaaatattgttttcaccgttttcactagattgtgtttttcatcggtatcaa |
459 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35449861 |
acccacttctaatggaacacctacccccgctagtaagtttctacctccaaaaatattgttttcaccgttttcactagattgtgtttttcatcggtatcaa |
35449762 |
T |
|
| Q |
460 |
gtcc-nnnnnnnnncacaagtataataatttctgaactgaatttcattaaaattctctttatttatctttgtttcttatgtgccacggtgcgcctaccat |
558 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |
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| T |
35449761 |
gtccttttttttttcacaagtataataatttctgaactgaatttcattaaaattctctttatttatctctggttcttatgtgccacggtgcgcctaccat |
35449662 |
T |
|
| Q |
559 |
aaaagagatatgatgacttttttcttcttgtatttgttttaatttctatcattctgaaaatttaaaatacatactcaatattctagagacatgataaaaa |
658 |
Q |
| |
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||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
35449661 |
aaaagag-tatgatgacttttttctgcttgtattcgttttaatttctatcattctgaaaatttaaaatacatactcaatattctatagacatgataaaaa |
35449563 |
T |
|
| Q |
659 |
gatgtagtagttaacgagatacacaaatgaaatgagggaagttacaatcgcaatcttcattattctaaacttgatattgaaagctcaattgcaatctatt |
758 |
Q |
| |
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||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
35449562 |
gatgtagtagttaacaagatacacaaatgaaatgagtgaagttacaatcgcaatctttattattctaaacttgatattgaaagctcaattgcaatctatt |
35449463 |
T |
|
| Q |
759 |
ttgt |
762 |
Q |
| |
|
|||| |
|
|
| T |
35449462 |
ttgt |
35449459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 158 - 294
Target Start/End: Complemental strand, 35441622 - 35441486
Alignment:
| Q |
158 |
tcatcttttcagtttggcaaaggcttgaagaacaaaatccagagttcttccaagcttactatacaagattggcgttgaagaagcaaatagaggaattcaa |
257 |
Q |
| |
|
|||| |||||||||||||||| |||| | ||||||||||| ||||||||| ||||||| ||||||||||||||||||||| | ||||||||| ||||||| |
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| T |
35441622 |
tcattttttcagtttggcaaaagcttaatgaacaaaatcctgagttcttcaaagcttattatacaagattggcgttgaagcaacaaatagagaaattcaa |
35441523 |
T |
|
| Q |
258 |
caaattaatgcataaacaaaaggaattaatggtctca |
294 |
Q |
| |
|
|||| || | |||||||| |||||||||| |||| |
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| T |
35441522 |
tgaattgttggaaaaacaaaaagaattaatggactca |
35441486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 783 - 829
Target Start/End: Complemental strand, 35449465 - 35449419
Alignment:
| Q |
783 |
attttgttttacagcaactgagaatccagcatgctagtatgtgtctg |
829 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
35449465 |
attttgttttacagcaactgagaatccagcatgctattatgtgtctg |
35449419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 596 - 666
Target Start/End: Complemental strand, 35441377 - 35441307
Alignment:
| Q |
596 |
tttaatttctatcattctgaaaatttaaaatacatactcaatattctagagacatgataaaaagatgtagt |
666 |
Q |
| |
|
||||| || ||||||||| |||||| |||||||||| | | ||||| | |||||||||||||||||||||| |
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|
| T |
35441377 |
tttaacttgtatcattctaaaaattcaaaatacatagttactattccaaagacatgataaaaagatgtagt |
35441307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 140 - 289
Target Start/End: Original strand, 1864714 - 1864863
Alignment:
| Q |
140 |
taagtttctttttccccttcatcttttcagtttggcaaaggcttgaagaacaaaatccagagttcttccaagcttactatacaagattggcgttgaagaa |
239 |
Q |
| |
|
||||||||||||||| || |||||| ||||||||||| |||| ||||| ||||||| |||||||| |||||||| || |||||||||||||||||| | |
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| T |
1864714 |
taagtttctttttccttctcgtctttttagtttggcaaaagcttaaagaagaaaatcctgagttctttcaagcttattacacaagattggcgttgaagca |
1864813 |
T |
|
| Q |
240 |
gcaaatagaggaattcaacaaattaatgcataaacaaaaggaattaatgg |
289 |
Q |
| |
|
||||| || | ||||||| ||| || ||||| ||||| ||||||||| |
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|
| T |
1864814 |
acaaattgaacagttcaacacattgttggataaataaaagaaattaatgg |
1864863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 148 - 245
Target Start/End: Complemental strand, 7239256 - 7239158
Alignment:
| Q |
148 |
tttttcccct-tcatcttttcagtttggcaaaggcttgaagaacaaaatccagagttcttccaagcttactatacaagattggcgttgaagaagcaaat |
245 |
Q |
| |
|
|||||||||| |||||||| |||| ||| ||| |||||||||||| ||| | || |||||| ||||||| ||||||||| ||| ||||||| ||||||| |
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| T |
7239256 |
tttttcccctctcatctttgcagtctggaaaaagcttgaagaacataatgctgaattcttcaaagcttattatacaagagtggtgttgaagcagcaaat |
7239158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 281 - 401
Target Start/End: Complemental strand, 51575844 - 51575724
Alignment:
| Q |
281 |
aattaatggtctcagagcaagctaaagttgcatcactaccaacctctaatggatttcattatcatgatgtttcatcgctacccacttctaatggaacacc |
380 |
Q |
| |
|
|||||| |||||| || ||| | | ||||||||| ||||| | |||||||||||||||| |||||| |||| |||| |||| | |||||||||| ||| |
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|
| T |
51575844 |
aattaacggtctcggaacaaaccatagttgcatctctacctatctctaatggatttcatcatcatgttgttccatcactacaaaattctaatggatcaca |
51575745 |
T |
|
| Q |
381 |
tacccccgctagtaagtttct |
401 |
Q |
| |
|
|| || ||||||||| |||| |
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|
| T |
51575744 |
tatccatgctagtaagattct |
51575724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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