View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14048_high_2 (Length: 443)

Name: NF14048_high_2
Description: NF14048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14048_high_2
NF14048_high_2
[»] chr3 (9 HSPs)
chr3 (3-425)||(1717764-1718186)
chr3 (164-352)||(1739395-1739583)
chr3 (182-331)||(1754877-1755026)
chr3 (174-352)||(1749254-1749432)
chr3 (13-67)||(13639459-13639513)
chr3 (1-67)||(46893416-46893482)
chr3 (1-67)||(29235692-29235758)
chr3 (1-67)||(48543213-48543279)
chr3 (35-67)||(54140812-54140844)
[»] scaffold0922 (1 HSPs)
scaffold0922 (1-67)||(710-776)
[»] chr8 (5 HSPs)
chr8 (1-68)||(30085447-30085514)
chr8 (1-67)||(33440574-33440640)
chr8 (1-67)||(28700598-28700664)
chr8 (15-65)||(31703822-31703872)
chr8 (2-67)||(6580875-6580939)
[»] chr1 (5 HSPs)
chr1 (12-67)||(932035-932090)
chr1 (1-59)||(11709656-11709714)
chr1 (1-67)||(19078956-19079022)
chr1 (1-67)||(19126844-19126910)
chr1 (1-65)||(14562603-14562667)
[»] chr4 (4 HSPs)
chr4 (3-67)||(37306476-37306540)
chr4 (1-68)||(51475233-51475300)
chr4 (1-67)||(31699549-31699615)
chr4 (13-67)||(43480299-43480353)
[»] chr2 (1 HSPs)
chr2 (1-65)||(5140042-5140106)
[»] chr5 (5 HSPs)
chr5 (5-67)||(42958487-42958549)
chr5 (12-67)||(5990589-5990644)
chr5 (12-67)||(18237206-18237261)
chr5 (1-67)||(41020248-41020314)
chr5 (12-84)||(34320913-34320985)
[»] chr6 (2 HSPs)
chr6 (1-66)||(32439521-32439586)
chr6 (12-67)||(7447636-7447691)
[»] chr7 (3 HSPs)
chr7 (12-68)||(47822035-47822091)
chr7 (1-68)||(17878725-17878792)
chr7 (13-67)||(557447-557501)


Alignment Details
Target: chr3 (Bit Score: 342; Significance: 0; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 3 - 425
Target Start/End: Original strand, 1717764 - 1718186
Alignment:
Q  3 tcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgagatttatatggatttcatctaatacgagggtaaatgt 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  |||| |||||||||||||||||| || | |||    
T  1717764 tcttatttagtgaaattcatgtggatatcaaatattggaaatggatcatacataaagtggtgagatccatatagatttcatctaatacgagagtgagtgt 1717863  T
Q  103 tnnnnnnngtgttagtaagagagtgttcttaacattctgtttcaggaatatatgaataaattttagatatatagatacaaaacctttttgctaagaattc 202  Q
    |       || ||||||||||||||||||||||||||||  | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1717864 tagaaaaagtattagtaagagagtgttcttaacattctgcctgaggaatatatgaataaattttagatatatagatacaaaacctttttgctaagaattc 1717963  T
Q  203 tatgacagagactgtctgaggaatgtatgaataaccccattctgtatatccatctcttgtcccactatgctcaagaccattttgagaaccttcaactgca 302  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  1717964 tatgacagagactgtctgaggaatgtatgaataaccccattctgtatatccatctcttgtcccactatgctcaaaaccattttgagaaccttcaactgca 1718063  T
Q  303 tgcaaatccacaatcactttcatcccatgcttactgcaagttataaagattaatgttactttaaagtacataattcaaatccgctctgtgactactgtag 402  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |||||||||||||    
T  1718064 tgcaaatccacaatcactttcatcccatgcttactgcaagttataaatattaatgttactttaaagtacataattaaaatccgctcggtgactactgtag 1718163  T
Q  403 taaaatatcatttatgtatttaa 425  Q
    |||||||||||||||||||||||    
T  1718164 taaaatatcatttatgtatttaa 1718186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 164 - 352
Target Start/End: Original strand, 1739395 - 1739583
Alignment:
Q  164 tttagatatatagatacaaaacctttttgctaagaattctatgacagagactgtctgaggaatgtatgaataaccccattctgtatatccatctcttgtc 263  Q
    |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||    
T  1739395 tttagatatatagatacataacctttttgctaagaactctatgacagagactgtctgtggaatgtatgaatcatcccattctgtatatccatctcttgtc 1739494  T
Q  264 ccactatgctcaagaccattttgagaaccttcaactgcatgcaaatccacaatcactttcatcccatgcttactgcaagttataaagat 352  Q
    ||||||||||||| ||||||||||||||||||||  |||||||| |||||||||||||||||||||||| |||||||||||| ||||||    
T  1739495 ccactatgctcaaaaccattttgagaaccttcaatggcatgcaagtccacaatcactttcatcccatgcctactgcaagttacaaagat 1739583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 182 - 331
Target Start/End: Original strand, 1754877 - 1755026
Alignment:
Q  182 aaacctttttgctaagaattctatgacagagactgtctgaggaatgtatgaataaccccattctgtatatccatctcttgtcccactatgctcaagacca 281  Q
    |||||||||||||| ||| ||||||||||||||||||||||| |||||||| | |||||||||| || ||||||||||||| ||||| || |||  ||||    
T  1754877 aaacctttttgctaggaaatctatgacagagactgtctgaggtatgtatgattcaccccattctataaatccatctcttgttccactgtgatcattacca 1754976  T
Q  282 ttttgagaaccttcaactgcatgcaaatccacaatcactttcatcccatg 331  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||    
T  1754977 ttttgagaaccttcaactgcatgcaagtccacaatcactttcatcccatg 1755026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 174 - 352
Target Start/End: Original strand, 1749254 - 1749432
Alignment:
Q  174 tagatacaaaacctttttgctaagaattctatgacagagactgtctgaggaatgtatgaataaccccattctgtatatccatctcttgtcccactatgct 273  Q
    |||||||||||||||| ||||||||| || || ||||  ||||||||||| ||||| |||| ||||||||||||||||||||||||||| |||||||| |    
T  1749254 tagatacaaaacctttgtgctaagaaatcaatcacagctactgtctgaggtatgtaagaatcaccccattctgtatatccatctcttgttccactatgtt 1749353  T
Q  274 caagaccattttgagaaccttcaactgcatgcaaatccacaatcactttcatcccatgcttactgcaagttataaagat 352  Q
    ||   |||||||||||||||||||| ||||||||||| ||||||||||||||| |||| || |||||| ||| ||||||    
T  1749354 cattgccattttgagaaccttcaacagcatgcaaatctacaatcactttcatctcatgatttctgcaatttagaaagat 1749432  T

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Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 13 - 67
Target Start/End: Original strand, 13639459 - 13639513
Alignment:
Q  13 tgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgaga 67  Q
    |||||||||||||| ||||| | |||||||||||||| |||||||||||||||||    
T  13639459 tgaaattcatgtgggtatcacacattggaaatggatctcacataaagtggtgaga 13639513  T

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Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 46893482 - 46893416
Alignment:
Q  1 tctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgaga 67  Q
    ||||||||| | |||||||||||||| || || | |||||||||||||| |||||||||||||||||    
T  46893482 tctcttattaaatgaaattcatgtgggtaacacacattggaaatggatcccacataaagtggtgaga 46893416  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 29235692 - 29235758
Alignment:
Q  1 tctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgaga 67  Q
    |||||||||  |||||||||||| ||||| || | ||| ||||||||||  ||||||||||||||||    
T  29235692 tctcttattgggtgaaattcatgaggataccacacattagaaatggatccaacataaagtggtgaga 29235758  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 48543279 - 48543213
Alignment:
Q  1 tctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgaga 67  Q
    |||||||||  ||||||||||||||| || || | |||||||||||| | |||||||| ||||||||    
T  48543279 tctcttattgggtgaaattcatgtgggtagcatacattggaaatggaccccacataaaatggtgaga 48543213  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 35 - 67
Target Start/End: Original strand, 54140812 - 54140844
Alignment:
Q  35 tattggaaatggatcacacataaagtggtgaga 67  Q
    ||||||||||||||| |||||||||||||||||    
T  54140812 tattggaaatggatcccacataaagtggtgaga 54140844  T

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Target: scaffold0922 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0922
Description:

Target: scaffold0922; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 710 - 776
Alignment:
Q  1 tctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgaga 67  Q
    ||||||||| ||||||||||||||||||| || | |||| ||||||||| |||||||||||||||||    
T  710 tctcttattgagtgaaattcatgtggataccacacattgaaaatggatcccacataaagtggtgaga 776  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 30085514 - 30085447
Alignment:
Q  1 tctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgagat 68  Q
    ||||||||| |||||||||||||||  | ||| || ||||||||||||| ||||||||||||||||||    
T  30085514 tctcttattgagtgaaattcatgtgagtgtcacatgttggaaatggatcccacataaagtggtgagat 30085447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 33440640 - 33440574
Alignment:
Q  1 tctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgaga 67  Q
    |||||||||  |||||| |||||||| || || | |||||||||||||| |||||||||||||||||    
T  33440640 tctcttattgggtgaaagtcatgtgggtaccacacattggaaatggatcccacataaagtggtgaga 33440574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 28700598 - 28700664
Alignment:
Q  1 tctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgaga 67  Q
    |||||||||  || ||||| |||||| || || |||||||||||| ||| |||||||||||||||||    
T  28700598 tctcttattgggttaaatttatgtgggtaccacatattggaaatgaatcccacataaagtggtgaga 28700664  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 15 - 65
Target Start/End: Complemental strand, 31703872 - 31703822
Alignment:
Q  15 aaattcatgtggatatcaaatattggaaatggatcacacataaagtggtga 65  Q
    ||||| |||||||||||| |  ||||||||||||| |||||||||||||||    
T  31703872 aaattaatgtggatatcacactttggaaatggatcccacataaagtggtga 31703822  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 67
Target Start/End: Original strand, 6580875 - 6580939
Alignment:
Q  2 ctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgaga 67  Q
    ||||||||  ||||||||||||||| || || | ||||||||| |||| |||||||||||||||||    
T  6580875 ctcttattgggtgaaattcatgtgggtaccacacattggaaat-gatcccacataaagtggtgaga 6580939  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 67
Target Start/End: Original strand, 932035 - 932090
Alignment:
Q  12 gtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgaga 67  Q
    |||||||||||||||||| || | |||||||||||||| |||||||||||||||||    
T  932035 gtgaaattcatgtggataccacacattggaaatggatcccacataaagtggtgaga 932090  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 11709714 - 11709656
Alignment:
Q  1 tctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaag 59  Q
    ||||||||| |||||||||||||||| || || | |||||||||||||| |||||||||    
T  11709714 tctcttattgagtgaaattcatgtgggtaccacacattggaaatggatcccacataaag 11709656  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 19078956 - 19079022
Alignment:
Q  1 tctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgaga 67  Q
    |||||||||  |||||| ||||| || || || | |||||||||||||| |||||||||||||||||    
T  19078956 tctcttattgggtgaaagtcatgcgggtaccacacattggaaatggatcccacataaagtggtgaga 19079022  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 19126844 - 19126910
Alignment:
Q  1 tctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgaga 67  Q
    |||||||||  |||||| ||||| || || || | |||||||||||||| |||||||||||||||||    
T  19126844 tctcttattgggtgaaagtcatgcgggtaccacacattggaaatggatcccacataaagtggtgaga 19126910  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 14562667 - 14562603
Alignment:
Q  1 tctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtga 65  Q
    ||||||||| ||||||||| |||| | || || |  ||||||||||||| |||||||||||||||    
T  14562667 tctcttattgagtgaaatttatgtaggtaccacactttggaaatggatcccacataaagtggtga 14562603  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 3 - 67
Target Start/End: Complemental strand, 37306540 - 37306476
Alignment:
Q  3 tcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgaga 67  Q
    |||||||  ||||||||||||||| || || | |||||||||||||| |||||||||||||||||    
T  37306540 tcttattgggtgaaattcatgtgggtaccacacattggaaatggatctcacataaagtggtgaga 37306476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 51475300 - 51475233
Alignment:
Q  1 tctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgagat 68  Q
    |||||||||  ||||||| ||||||| || || | |||||||||||||| ||||||||||||||||||    
T  51475300 tctcttattgggtgaaatccatgtgggtaccacacattggaaatggatcccacataaagtggtgagat 51475233  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 31699615 - 31699549
Alignment:
Q  1 tctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgaga 67  Q
    |||||||||  ||||||||||||||| ||||| | |||||||||||| | |||||||| ||||||||    
T  31699615 tctcttattgggtgaaattcatgtgggtatcatacattggaaatggaccccacataaaatggtgaga 31699549  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 67
Target Start/End: Original strand, 43480299 - 43480353
Alignment:
Q  13 tgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgaga 67  Q
    |||||||||||||| || || | |||| ||||||||| |||||||||||||||||    
T  43480299 tgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtgaga 43480353  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 5140106 - 5140042
Alignment:
Q  1 tctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtga 65  Q
    ||||||||| |||||||||||||||| || || | |||| ||||||||| |||||||||||||||    
T  5140106 tctcttattgagtgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtga 5140042  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 5 - 67
Target Start/End: Original strand, 42958487 - 42958549
Alignment:
Q  5 ttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgaga 67  Q
    |||||| ||||||||||||||| || ||   |||||||||||||| |||||||||||||||||    
T  42958487 ttatttggtgaaattcatgtgggtaccacgcattggaaatggatcccacataaagtggtgaga 42958549  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 67
Target Start/End: Complemental strand, 5990644 - 5990589
Alignment:
Q  12 gtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgaga 67  Q
    ||||||||||||||| || || | |||||||||||||| |||||||| ||||||||    
T  5990644 gtgaaattcatgtgggtaccatacattggaaatggatcccacataaaatggtgaga 5990589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 67
Target Start/End: Complemental strand, 18237261 - 18237206
Alignment:
Q  12 gtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgaga 67  Q
    ||||||||||||||| ||||| | |||| |||| |||| |||||||||||||||||    
T  18237261 gtgaaattcatgtgggtatcacacattgaaaatagatcccacataaagtggtgaga 18237206  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 41020314 - 41020248
Alignment:
Q  1 tctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgaga 67  Q
    |||||||||  |||||||  |||||| || || |||||||||||| ||| |||||||||||||||||    
T  41020314 tctcttattgggtgaaatatatgtgggtaccacatattggaaatgaatcccacataaagtggtgaga 41020248  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 84
Target Start/End: Complemental strand, 34320985 - 34320913
Alignment:
Q  12 gtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgagatttatatggatttcatc 84  Q
    ||||||| |||||||||| || |  ||| |||| |||| ||||||||||||||||| | | ||||||||||||    
T  34320985 gtgaaatccatgtggataccatactttgaaaatagatcccacataaagtggtgagactcacatggatttcatc 34320913  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 32439521 - 32439586
Alignment:
Q  1 tctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgag 66  Q
    |||||||||  ||||||||||||||| || || | |||||||||||||| ||||||||| ||||||    
T  32439521 tctcttattgggtgaaattcatgtgggtaccacacattggaaatggatcccacataaagcggtgag 32439586  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 67
Target Start/End: Complemental strand, 7447691 - 7447636
Alignment:
Q  12 gtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgaga 67  Q
    ||||||||||||||| || || | ||| |||||||||| |||||||||||||||||    
T  7447691 gtgaaattcatgtgggtaccacacattagaaatggatcccacataaagtggtgaga 7447636  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 12 - 68
Target Start/End: Original strand, 47822035 - 47822091
Alignment:
Q  12 gtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgagat 68  Q
    ||||||| ||||||| || || | |||||||||||||| ||||||||||||||||||    
T  47822035 gtgaaatccatgtgggtaccacacattggaaatggatcccacataaagtggtgagat 47822091  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 17878725 - 17878792
Alignment:
Q  1 tctcttatttagtgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgagat 68  Q
    |||||||||  |||||| |||||||| ||||| | ||| ||||| |||| ||||||||||||||||||    
T  17878725 tctcttattgggtgaaagtcatgtgggtatcacacattagaaatagatcccacataaagtggtgagat 17878792  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 67
Target Start/End: Complemental strand, 557501 - 557447
Alignment:
Q  13 tgaaattcatgtggatatcaaatattggaaatggatcacacataaagtggtgaga 67  Q
    |||||||||||||| ||||| | |||  ||||||||| |||||||||||||||||    
T  557501 tgaaattcatgtgggtatcacacattaaaaatggatcccacataaagtggtgaga 557447  T

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