View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14048_high_3 (Length: 355)
Name: NF14048_high_3
Description: NF14048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14048_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 13 - 307
Target Start/End: Complemental strand, 27956907 - 27956598
Alignment:
| Q |
13 |
aaggtagtggttaagggtggtggatttgcggttttagatttggtggcgtgaagttggaggattagaaaagtcattgttaaacggtggtagaaacgtcgta |
112 |
Q |
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| T |
27956907 |
aaggtagtggttaagggtggtggat--gcggtttcagatttggtggcgtgaagttggaagattagaaaagtcattgttaagcggtggtagaaacatcgta |
27956810 |
T |
|
| Q |
113 |
cttctaacttggtaacnnnnnnngtgcttagatatacttaagttcgaaaataagtacaag-----------------gagtgtctttcaaaatacataaa |
195 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||| |
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| T |
27956809 |
cttctaacttggtaacaaaaaaagtgcttagatatacttaagttcgaaaataagtacaagacatatggtacacaaaggagcgtctctcaaaatacataaa |
27956710 |
T |
|
| Q |
196 |
atcatgaagactgctttaaaccaatgctatgagtattgtatcttcaaataaatgtttgcgatcaagttctaagctgtaacataagtttgttttacgttgc |
295 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
27956709 |
atcatgaagactgctttaaactaatgctatgagtattgtatcttcaaataaatgtttgcgatcaagttctaagctgtaacataaatttgttttacgttgc |
27956610 |
T |
|
| Q |
296 |
caaaacaaaatg |
307 |
Q |
| |
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|||||||||||| |
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| T |
27956609 |
caaaacaaaatg |
27956598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 13 - 224
Target Start/End: Original strand, 16331960 - 16332172
Alignment:
| Q |
13 |
aaggtagtggttaagggtggtggatttgcggttttagatttggtggcgtgaagttggaggattagaaaagtcattgttaaacggtggtagaaacgtcgta |
112 |
Q |
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| T |
16331960 |
aaggtagtggttaagggtggtggatttgcg-ttttaaatt-ggtggcctgaagttggaagataagaaaagtcattgttaaacagtgataaaaactttgta |
16332057 |
T |
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| Q |
113 |
cttctaacttggtaacnnnnnnngtgcttagatatacttaagttcgaaaataa-gtac---aaggagtgtctttcaaaatacataaaatcatgaagactg |
208 |
Q |
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||| |||| | ||||| |||||||| ||||||||| || |||||||| |||| |||||||||||||||||| ||||||||||||||||| | |
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| T |
16332058 |
cttataacatcgtaac-aaaaaagtgcttaggtatacttaaatttgaaaataaggtacacaaaggagtgtctttcaaaagacataaaatcatgaagagta |
16332156 |
T |
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| Q |
209 |
ctttaaaccaatgcta |
224 |
Q |
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|| ||||| ||||||| |
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| T |
16332157 |
ctctaaactaatgcta |
16332172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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