View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14048_low_2 (Length: 698)
Name: NF14048_low_2
Description: NF14048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14048_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 613; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 613; E-Value: 0
Query Start/End: Original strand, 24 - 681
Target Start/End: Complemental strand, 42637412 - 42636755
Alignment:
| Q |
24 |
ggtgatggttggtatttggaaattaacttgtacgagtactaatttgtatttttagtgattagcatttcatgtggagtatccatgatagttgaaatttgga |
123 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42637412 |
ggtgatggttggtatttggaaattaacttgtacgagtactaatttgtatttttagtgattagcatttcatgtggagtatccatgatagttgaaatttgga |
42637313 |
T |
|
| Q |
124 |
aataacctagtactgctatactaatgttatgacctacacaggtatacagggttctataaagggatacagagtgcgggggctgcagttgcatggcaaattg |
223 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42637312 |
aataacctagtactactatactaatgttatgacctacacaggtatacagggttctataaagggatacagagtgcgggggctgcagttgcatggcaaattg |
42637213 |
T |
|
| Q |
224 |
ataaccacaatgtatctccaatgacacagttgattgtgaattgggtgctcactacactaagctatccgttattgttggttttaatgattttggttgtgaa |
323 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42637212 |
ataaccacaatgtatctccaatgacacagttgattgtgaattgggtgctcactacactaagctatccgttattgttggttttaatgattttggttgtgaa |
42637113 |
T |
|
| Q |
324 |
agaggacaataacgatgaagagaaatgataatagtctgcaatataatgtttttagcagtatttagagtcattctaacaggtttttaactgttttagttga |
423 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42637112 |
agaggacaataacgatgaagagaaatgataatagtctgtaatataatgtttttagcagtatttagagtcattctaacaggtttttaactgttttagttga |
42637013 |
T |
|
| Q |
424 |
gtttgtgtaaataatataatgcatgagtatggaataattattaggcatacaagacctttaaacatgctaaatcacctgaactagacaattttgtggtcat |
523 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42637012 |
gtttgtgtaaataatataatgcatgagtatggaataactattaggcatacaagacctttaaacatgctaaatcacctgaactagacaattttgtggtcat |
42636913 |
T |
|
| Q |
524 |
gttatactttcttagatggtatatcaggtgannnnnnnatgtatagtcactacaaatatttcagtgaggagaaatatgacaaggaatgaagaaaatcaaa |
623 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
42636912 |
gttatactttcttagatggtatatcaggtgattttttgatgtatagtcactacaaatgtttcagtgaggagaaatatgacaaggaatgaagaaaatcaaa |
42636813 |
T |
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| Q |
624 |
aggatccactactagtacatgcacgatgcgtgctacaatccacgtgtcacgcaattgt |
681 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |
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| T |
42636812 |
aggatccactactagtacatgcacgatgcgtgctacaatccacatgtcatgcaattgt |
42636755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 158 - 327
Target Start/End: Complemental strand, 42630392 - 42630223
Alignment:
| Q |
158 |
tacacaggtatacagggttctataaagggatacagagtgcgggggctgcagttgcatggcaaattgataaccacaatgtatctccaatgacacagttgat |
257 |
Q |
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|||||||||| || || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || || ||||||||| |||||||||| |
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| T |
42630392 |
tacacaggtacactggattctataaaggaatacagagtgcgggggctgcagttgcatggcaaattgataaccataacgtgtctccaatggcacagttgat |
42630293 |
T |
|
| Q |
258 |
tgtgaattgggtgctcactacactaagctatccgttattgttggttttaatgattttggttgtgaaagag |
327 |
Q |
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||| |||||||| || |||||| |||||||||| |||||||| ||||| ||| |||||| |||||||||| |
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| T |
42630292 |
tgtcaattgggtactaactacattaagctatcccttattgttagttttgatggttttggctgtgaaagag |
42630223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 37 - 102
Target Start/End: Complemental strand, 42630606 - 42630541
Alignment:
| Q |
37 |
atttggaaattaacttgtacgagtactaatttgtatttttagtgattagcatttcatgtggagtat |
102 |
Q |
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||||||||||||||| |||| |||| ||| ||||||||||||||||||||||||| |||||||||| |
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| T |
42630606 |
atttggaaattaactagtactagtagtaacttgtatttttagtgattagcatttcttgtggagtat |
42630541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 99
Target Start/End: Complemental strand, 42630529 - 42630468
Alignment:
| Q |
38 |
tttggaaattaacttgtacgagtactaatttgtatttttagtgattagcatttcatgtggag |
99 |
Q |
| |
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|||||||||||||| | || ||||||||||| |||||||||| | ||||||||| ||||||| |
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| T |
42630529 |
tttggaaattaactagaaccagtactaatttttatttttagtaactagcatttcttgtggag |
42630468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 3e-16; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 414 - 554
Target Start/End: Complemental strand, 33037062 - 33036922
Alignment:
| Q |
414 |
ttttagttgagtttgtgtaaataatataatgcatgagtatggaataattattaggcatacaagacctttaaacatgctaaatcacctgaactagacaatt |
513 |
Q |
| |
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|||||||||||||| ||||||||| ||| ||||| |||| | | |||||||| ||||||||||| ||||||| ||||| || ||| |||||| | |
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| T |
33037062 |
ttttagttgagtttttgtaaataaatcaatatatgagcatggtagagctattaggcgtacaagaccttgaaacatgacaaatctcccaaaccagacaact |
33036963 |
T |
|
| Q |
514 |
ttgtggtcatgttatactttcttagatggtatatcaggtga |
554 |
Q |
| |
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|||||||||||||||||||||||| | | ||||||| |||| |
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| T |
33036962 |
ttgtggtcatgttatactttcttacaagatatatcaagtga |
33036922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 601 - 661
Target Start/End: Original strand, 23072508 - 23072568
Alignment:
| Q |
601 |
gacaaggaatgaagaaaatcaaaaggatccactactagtacatgcacgatgcgtgctacaa |
661 |
Q |
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|||||| ||||||||||| || ||||||| |||||| ||||||| |||||||||||||| |
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| T |
23072508 |
gacaagtaatgaagaaaagcataaggatcaactactggtacatgtttgatgcgtgctacaa |
23072568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 414 - 455
Target Start/End: Complemental strand, 15295636 - 15295595
Alignment:
| Q |
414 |
ttttagttgagtttgtgtaaataatataatgcatgagtatgg |
455 |
Q |
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|||||||||||||| |||||||||| ||||| |||||||||| |
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| T |
15295636 |
ttttagttgagtttatgtaaataatttaatggatgagtatgg |
15295595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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