View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14048_low_4 (Length: 383)
Name: NF14048_low_4
Description: NF14048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14048_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 10 - 300
Target Start/End: Original strand, 10688723 - 10689014
Alignment:
| Q |
10 |
gcataggtacggatacaataccaagtgtaacaaatacaacggtttacagaaattaaggtaagtcaataaaaaa-caagattctatcataaaaag-aaact |
107 |
Q |
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| T |
10688723 |
gcataggtacggatacaataccaagtgtaacaaatacaacggtttaaagaaattaaggtaagtcaataaaaaaacaagattctttcataaaaaggaaact |
10688822 |
T |
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| Q |
108 |
caaatatgcaaataatattggtatcgaacaagtttcacgcatattggtattggaggctagctcttacatttttgtagaaaaaacatcacctgtttttcat |
207 |
Q |
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| T |
10688823 |
caaatatgcaaataatattgatatcgaacaagtttcacgcatattggtataggagactagctcttacatttttgaagaaaaaacatcacctgtttttcat |
10688922 |
T |
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| Q |
208 |
tttcttcaagagcattaatcaggaattaactgtttttcattagcatttgaataaattaggcatcagtgtaataaaaataagttacttgttttg |
300 |
Q |
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| T |
10688923 |
tttctt-aagagcattaatcaggcattaactgtttctcattagcatttgaataaattaggcatcagtgtaataaaaataagttacttgttttg |
10689014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 323 - 366
Target Start/End: Original strand, 10689029 - 10689072
Alignment:
| Q |
323 |
ctacaggggataatgatgctaaataagaatcatcacagtagttt |
366 |
Q |
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| T |
10689029 |
ctacaggggataatgatgctaaataagaaccatcacagtagttt |
10689072 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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