View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14048_low_6 (Length: 304)
Name: NF14048_low_6
Description: NF14048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14048_low_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 21056419 - 21056133
Alignment:
| Q |
1 |
tagtcaaagcagaattctccagataatttcaccaaatcaatagtgcacaatccttgtgcaacacatgagaatttgacttctatttcattattatatannn |
100 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |
|
|
| T |
21056419 |
tagtcaaagcagaattctcgagataatttcaccaaatcaatagtgcacaatccttgtgaaccacatgagaatttgacttctatttcattattatatattt |
21056320 |
T |
|
| Q |
101 |
nnnnnnatcaatttttgt-cagtataatagcacataaatacctatcatagtaatttcccaaacgaatcaaatacatgcaatgataagaaagtttccagac |
199 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
21056319 |
ttttt-atcaatttttgtgcagtataatagcacataaatacctatcatagtaatttcccaaacgaatcaaatacatgcaatgataagaaagtttgcagac |
21056221 |
T |
|
| Q |
200 |
acaatgagcaacaccttctcaatgtagccggacatcaactttttctatatctaatctactttactataagcatgccattgtcaagtta |
287 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
21056220 |
acaatgagcaacaccttctcaatgtagccggacatcaactttttctatatctaatctactttacaataagcatgccattgtcaagtta |
21056133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 123 - 283
Target Start/End: Original strand, 26365654 - 26365814
Alignment:
| Q |
123 |
ataatagcacataaatacctatcatagtaatttcccaaac-gaatcaaatacatgcaatgataagaaagtttccagacacaatgagcaacaccttctcaa |
221 |
Q |
| |
|
|||||| |||||| || | ||||||| |||||||||||| ||||||||| ||||||||| || | | |||| | |||||||||||||| |||||||||| |
|
|
| T |
26365654 |
ataataacacatagatgcatatcatattaatttcccaaatagaatcaaatgcatgcaatgcta-gcatgtttgctgacacaatgagcaaaaccttctcaa |
26365752 |
T |
|
| Q |
222 |
tgtagccggacatcaactttttctatatctaatctactttactataagcatgccattgtcaa |
283 |
Q |
| |
|
| |||| ||| ||||||||||||||||| |||| | ||| ||||| |||||||||| |||| |
|
|
| T |
26365753 |
tctagctggatatcaactttttctatattcaatcaaatttcctataggcatgccattttcaa |
26365814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 205 - 287
Target Start/End: Original strand, 26363244 - 26363326
Alignment:
| Q |
205 |
gagcaacaccttctcaatgtagccggacatcaactttttctatatctaatctactttactataagcatgccattgtcaagtta |
287 |
Q |
| |
|
|||||| |||||| ||||||||| |||||||||||||||| |||| |||| | ||| |||||||||||||||| |||||||| |
|
|
| T |
26363244 |
gagcaaaaccttcacaatgtagctggacatcaactttttcaatattaaatcaaatttcctataagcatgccattctcaagtta |
26363326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University