View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14048_low_9 (Length: 209)
Name: NF14048_low_9
Description: NF14048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14048_low_9 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 136; Significance: 4e-71; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 47803761 - 47803610
Alignment:
| Q |
1 |
gttgtatcgatggaacctttgccttcacttaatcatgtttactttgtggttttacaaggcgagagagttacacaattattttcaagtgatgattccaaaa |
100 |
Q |
| |
|
||||||| |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
47803761 |
gttgtattgatggaacctttgccttcgcttaatcatgtttactttgtggttttgcaaggcgagagagttacacaatcattttcaagtgatgattccaaaa |
47803662 |
T |
|
| Q |
101 |
ttctcgttaatggttctagatttacttgctatcaataactcgtacttacatc |
152 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47803661 |
ttctcgttaatggttctagatttacttgctatcaataactcgtacttacatc |
47803610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 145 - 192
Target Start/End: Complemental strand, 47803036 - 47802989
Alignment:
| Q |
145 |
cttacatcaacttgatgaaaataatgtatttctggtgattcttgaggg |
192 |
Q |
| |
|
|||||||||| |||||||||||||||| |||||||||||||||||||| |
|
|
| T |
47803036 |
cttacatcaatttgatgaaaataatgtgtttctggtgattcttgaggg |
47802989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University