View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14049_high_12 (Length: 329)

Name: NF14049_high_12
Description: NF14049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14049_high_12
NF14049_high_12
[»] chr4 (1 HSPs)
chr4 (1-329)||(38729531-38729855)
[»] chr6 (1 HSPs)
chr6 (1-329)||(385687-386011)


Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 329
Target Start/End: Complemental strand, 38729855 - 38729531
Alignment:
Q  1 acattgatcattgagtcacatgcaaaatcagggaggcttgatattgatatgtctgcattttcagatatatatggagaaagctggatttctaccaactcca 100  Q
    |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||    ||||||||||||||||||||||||||||    
T  38729855 acattgatcattgagtcacatgcaaaatcagggaagcttgatattgctatgtctgcattttcagatat----ggagaaagctggatttctaccaactcca 38729760  T
Q  101 tctacgtatgctcgtctcttggaaatgcatgctgcgtctggacaaattgatcatgccatcaaactgtacaattcaatgactaatgcaggtttaaggccag 200  Q
    ||||| |||||| |||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||    
T  38729759 tctacatatgcttgtctcttggaaatgcatgctgcgtctggacaaatcgatcatgctatgaaactgtacaattcaatgactaatgcaggtttaaggccag 38729660  T
Q  201 gcctaagcacttacactgttcttttatctctactggctaataagaagcttgtggatgttgctgccaaagttctacttgaaatgaagaccatgggatattc 300  Q
    |||| |||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  38729659 gcctgagcacttatactgttcttttatctctacttgctaataagaagctggtggatgttgctgccaaagttctacttgaaatgaagacaatgggatattc 38729560  T
Q  301 tgtggatgtgacagctagtgatgttttga 329  Q
    |||||||||||||||||||||||||||||    
T  38729559 tgtggatgtgacagctagtgatgttttga 38729531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 329
Target Start/End: Original strand, 385687 - 386011
Alignment:
Q  1 acattgatcattgagtcacatgcaaaatcagggaggcttgatattgatatgtctgcattttcagatatatatggagaaagctggatttctaccaactcca 100  Q
    ||||||||||| ||||| |||||||||||||||| ||||||||||| |||||||||||||||||| ||    |||||||||||||||||||| ||||| |    
T  385687 acattgatcatcgagtctcatgcaaaatcagggaagcttgatattgctatgtctgcattttcagacat----ggagaaagctggatttctactaactcta 385782  T
Q  101 tctacgtatgctcgtctcttggaaatgcatgctgcgtctggacaaattgatcatgccatcaaactgtacaattcaatgactaatgcaggtttaaggccag 200  Q
    ||||| || ||| |||| ||||||||||||||| | || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  385783 tctacatacgcttgtctattggaaatgcatgcttcatccggacaaattgatcatgccatgaaactgtacaattcaatgactaatgcaggtttaaggccag 385882  T
Q  201 gcctaagcacttacactgttcttttatctctactggctaataagaagcttgtggatgttgctgccaaagttctacttgaaatgaagaccatgggatattc 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  385883 gcctaagcacttacactgttcttttatctctactggctaataagaagcttgtggatgttgctgccaaagttctacttgaaatgaagacgatgggatattc 385982  T
Q  301 tgtggatgtgacagctagtgatgttttga 329  Q
    |||||||||||||||||||||||||||||    
T  385983 tgtggatgtgacagctagtgatgttttga 386011  T

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