View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14049_high_14 (Length: 323)
Name: NF14049_high_14
Description: NF14049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14049_high_14 |
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Alignment Details
Target: chr2 (Bit Score: 112; Significance: 1e-56; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 2 - 121
Target Start/End: Original strand, 16594364 - 16594483
Alignment:
| Q |
2 |
aattatctaacatcctaatcaaacatcatcaatacaaaagtatactaagggcaactacaattataacttaaaaaattcaatttatttaactaacttaatt |
101 |
Q |
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|||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16594364 |
aattatctaacatcctaatcaaacatcatcaaaacaaaagcatactaagggcaactacaattataacttaaaaaattcaatttatttaactaacttaatt |
16594463 |
T |
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| Q |
102 |
aatatttataaatgtatgaa |
121 |
Q |
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|||||||||||||||||||| |
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| T |
16594464 |
aatatttataaatgtatgaa |
16594483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 197 - 323
Target Start/End: Original strand, 16594559 - 16594683
Alignment:
| Q |
197 |
gttcagacacataacataatgtattgaaacccaaacaactggatctaaaaaactcatatctaaaacccaaagccacatgttccaaatcaaaacaaaagaa |
296 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| || |||||||||||||||||||||||||||||| |
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| T |
16594559 |
gttcagacacataacataatgtattgaaacccaaaca-ctggat-taaaaaactcatatctaaaactcatagccacatgttccaaatcaaaacaaaagaa |
16594656 |
T |
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| Q |
297 |
ttaaacataaaaatggataggattgag |
323 |
Q |
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||||||||||||||||||||||||||| |
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| T |
16594657 |
ttaaacataaaaatggataggattgag |
16594683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 16374960 - 16374996
Alignment:
| Q |
2 |
aattatctaacatcctaatcaaacatcatcaatacaa |
38 |
Q |
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|||||||||||||||||||||||||||||||| |||| |
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| T |
16374960 |
aattatctaacatcctaatcaaacatcatcaaaacaa |
16374996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 11454298 - 11454249
Alignment:
| Q |
2 |
aattatctaacatcctaatcaaacatcatcaatacaaaagtatactaagg |
51 |
Q |
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||||||||| ||||||||||||||||||| || | |||| |||||||||| |
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| T |
11454298 |
aattatctagcatcctaatcaaacatcataaaaaaaaaattatactaagg |
11454249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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