View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14049_high_8 (Length: 377)
Name: NF14049_high_8
Description: NF14049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14049_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 306; Significance: 1e-172; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 32 - 357
Target Start/End: Complemental strand, 47969552 - 47969227
Alignment:
| Q |
32 |
tcttccatgatggccaattcccagacaagtgttgttcaagttcaacatcatcatcgaggtcggagagagcattgattttggtcttggacagtttattatg |
131 |
Q |
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| T |
47969552 |
tcttccatgatggccaattgccagacaagtgttgttcaagttcaacatcatcgtcgaggtcggagagagcattgattttggtcttggacagtttattatg |
47969453 |
T |
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| Q |
132 |
ggtttctttgatatcttgttgagtattactacatgaaactactgttctttgtttggttctgtggatgagtttggaaggtgtgaagtggaagtgaaaacgt |
231 |
Q |
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| T |
47969452 |
ggtttctttgatatcttgttgagtattactacatgaaactactgttctttgtttggttctgtggatgagtttggaaggtgtgaagtggaagtgaaaacgt |
47969353 |
T |
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| Q |
232 |
tgaaaagtggttttgataaaagggttgtgtgaatttattctttgattctgagtttgaggttgagtaaagaaacatgatgatttactgttatgtggtttga |
331 |
Q |
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| T |
47969352 |
tgaaaagtggttttgataaaagggttgtgtgaatttgttatttgattctgagtttgaggttgagtaaagaaacatgatgatttactattatgtggtttga |
47969253 |
T |
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| Q |
332 |
gagtgattatggtcattttgatgatg |
357 |
Q |
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| T |
47969252 |
gagtgattatggtcattttgatgatg |
47969227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 263
Target Start/End: Original strand, 8375672 - 8375736
Alignment:
| Q |
199 |
agtttggaaggtgtgaagtggaagtgaaaacgttgaaaagtggttttgataaaagggttgtgtga |
263 |
Q |
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| T |
8375672 |
agtttggaaggtgtgaagtggaagtgaaagtgttgaaaacaagttttgatagaaggaatgtgtga |
8375736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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