View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1404_high_104 (Length: 285)
Name: NF1404_high_104
Description: NF1404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1404_high_104 |
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Alignment Details
Target: chr7 (Bit Score: 149; Significance: 9e-79; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 124 - 276
Target Start/End: Complemental strand, 44769416 - 44769264
Alignment:
| Q |
124 |
gtaacgtctagtgaagatacagtggtttagaattgtggtctacaatcgcatttgccacaacaatataacaattttagaggtcttacatcgcgattgttag |
223 |
Q |
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| T |
44769416 |
gtaacgtctagtgaagatacagtggtttagaattgtggtctacaatcgcatttgccacaacaatataacaattttagaggtcttacatcgcgattgttag |
44769317 |
T |
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| Q |
224 |
ttaactctaagattcttttctaagaaactcatcaaattgtgatacattcatct |
276 |
Q |
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| T |
44769316 |
ttaactctaagattcttttctaagaaactcatcaaattgttatacattcatct |
44769264 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 30 - 78
Target Start/End: Complemental strand, 44769509 - 44769461
Alignment:
| Q |
30 |
ctagcaaggtccattttttggcttcactgtcttggacttatacattgac |
78 |
Q |
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| T |
44769509 |
ctagcaaggtccattttttggcttcactgtcttggacttatacattgac |
44769461 |
T |
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