View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1404_high_106 (Length: 281)
Name: NF1404_high_106
Description: NF1404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1404_high_106 |
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| [»] scaffold1004 (1 HSPs) |
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| [»] scaffold0760 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 42 - 245
Target Start/End: Complemental strand, 7428527 - 7428324
Alignment:
| Q |
42 |
acagacaaaccataaaccaaattcaacaacgaagacagaaacggttacgttgacggaaaccctaacattgctttcactacaagcggcaccactacccacg |
141 |
Q |
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||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7428527 |
acagacaaaccgtaaaccaaattcaacaacgaagacagaaacagttacgttgacggaaaccctaacattgctttcactacaagcggcaccactacccacg |
7428428 |
T |
|
| Q |
142 |
cttccgtttgatcttgttgcagaaattttgtgtagaattccggtaaagttactcattcagcttcgctgcctctgtaagtgcttcaattctttaatctctg |
241 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7428427 |
cttccgtttgatcttgttgcagaaattttgtgtagaattccggtaaagttactcattcagcttcgctgcctctgtaagtgcttcaattctttaatctctg |
7428328 |
T |
|
| Q |
242 |
atcc |
245 |
Q |
| |
|
|||| |
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|
| T |
7428327 |
atcc |
7428324 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 42 - 245
Target Start/End: Original strand, 12217153 - 12217356
Alignment:
| Q |
42 |
acagacaaaccataaaccaaattcaacaacgaagacagaaacggttacgttgacggaaaccctaacattgctttcactacaagcggcaccactacccacg |
141 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||| |
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| T |
12217153 |
acagacaaaccgtaaaccaaattcaacaacgaagacagaaacggttaccttgacggaaaccctaacattgctttcacttcaggcggcaccactacccacg |
12217252 |
T |
|
| Q |
142 |
cttccgtttgatcttgttgcagaaattttgtgtagaattccggtaaagttactcattcagcttcgctgcctctgtaagtgcttcaattctttaatctctg |
241 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
12217253 |
cttccgtttgatcttgttgcagaaattttgtgtagaattccggtaaagttactcattcagcttcgctgcctctgtaagtccttcaattctttaatctctg |
12217352 |
T |
|
| Q |
242 |
atcc |
245 |
Q |
| |
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|||| |
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|
| T |
12217353 |
atcc |
12217356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 190 - 245
Target Start/End: Complemental strand, 7325169 - 7325114
Alignment:
| Q |
190 |
ttactcattcagcttcgctgcctctgtaagtgcttcaattctttaatctctgatcc |
245 |
Q |
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|||||||| |||||||| ||||||||||||| ||||||||||||||| |||||||| |
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| T |
7325169 |
ttactcatacagcttcggtgcctctgtaagttcttcaattctttaatttctgatcc |
7325114 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 190 - 245
Target Start/End: Complemental strand, 7443766 - 7443711
Alignment:
| Q |
190 |
ttactcattcagcttcgctgcctctgtaagtgcttcaattctttaatctctgatcc |
245 |
Q |
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|
|||||||| || ||||| ||||||||||||| ||||||||||||||| |||||||| |
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| T |
7443766 |
ttactcatacaacttcggtgcctctgtaagttcttcaattctttaatttctgatcc |
7443711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 247
Target Start/End: Original strand, 2501455 - 2501503
Alignment:
| Q |
199 |
cagcttcgctgcctctgtaagtgcttcaattctttaatctctgatccta |
247 |
Q |
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| T |
2501455 |
cagcttcgatgcctttgtaagttcttcaattctttaatttctgatccta |
2501503 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 130 - 245
Target Start/End: Complemental strand, 772357 - 772242
Alignment:
| Q |
130 |
ccactacccacgcttccgtttgatcttgttgcagaaattttgtgtagaattccggtaaagttactcattcagcttcgctgcctctgtaagtgcttcaatt |
229 |
Q |
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||||| ||||| ||||| || |||||||| || || ||| |||| | |||| |||||||||||| | ||||||||||||||||| |||| ||| ||| |
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| T |
772357 |
ccactgcccactcttccattcgatcttgtggcggagattctgtgccggcttcctgtaaagttactcgtgcagcttcgctgcctctgcaagtcctttaata |
772258 |
T |
|
| Q |
230 |
ctttaatctctgatcc |
245 |
Q |
| |
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|| |||| |||||||| |
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| T |
772257 |
ctctaatatctgatcc |
772242 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 247
Target Start/End: Original strand, 2491354 - 2491431
Alignment:
| Q |
170 |
tgtgtagaattccggtaaagttactcattcagcttcgctgcctctgtaagtgcttcaattctttaatctctgatccta |
247 |
Q |
| |
|
||||||| ||||||| || ||||| | |||||||| ||||| ||||||| |||||||||||||| |||||||||| |
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| T |
2491354 |
tgtgtaggcttccggtgaaattactggtacagcttcgatgcctttgtaagtttttcaattctttaatttctgatccta |
2491431 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 130 - 247
Target Start/End: Original strand, 33037365 - 33037482
Alignment:
| Q |
130 |
ccactacccacgcttccgtttgatcttgttgcagaaattttgtgtagaattccggtaaagttactcattcagcttcgctgcctctgtaagtgcttcaatt |
229 |
Q |
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|
||||||||||| |||||||||||||| || || |||||| | || ||| |||||||||| | |||||||| ||||| || |||||||||| |||||| |
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| T |
33037365 |
ccactacccactcttccgtttgatctcgtcgctgaaattctatgcagacttccggtaaaactcctcattcaacttcgatgtctctgtaagtctatcaatt |
33037464 |
T |
|
| Q |
230 |
ctttaatctctgatccta |
247 |
Q |
| |
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| ||||| |||||||||| |
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| T |
33037465 |
cgttaatttctgatccta |
33037482 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 142 - 245
Target Start/End: Complemental strand, 24418290 - 24418187
Alignment:
| Q |
142 |
cttccgtttgatcttgttgcagaaattttgtgtagaattccggtaaagttactcattcagcttcgctgcctctgtaagtgcttcaattctttaatctctg |
241 |
Q |
| |
|
||||| || |||||||| || || ||| ||||||| |||| || ||||||||| |||| |||||||| ||||| |||| ||||||||| |||||||||| |
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|
| T |
24418290 |
cttcccttcgatcttgtagctgagattctgtgtaggcttcccgtgaagttactccttcaacttcgctgtctctgcaagtccttcaattcattaatctctg |
24418191 |
T |
|
| Q |
242 |
atcc |
245 |
Q |
| |
|
|||| |
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|
| T |
24418190 |
atcc |
24418187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1004 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold1004
Description:
Target: scaffold1004; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 130 - 244
Target Start/End: Original strand, 1364 - 1478
Alignment:
| Q |
130 |
ccactacccacgcttccgtttgatcttgttgcagaaattttgtgtagaattccggtaaagttactcattcagcttcgctgcctctgtaagtgcttcaatt |
229 |
Q |
| |
|
|||||||||| |||||||| ||||||||||| ||||| |||||||| |||| || || |||||| |||| |||||||| |||| |||| ||||| | |
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| T |
1364 |
ccactacccagtcttccgttagatcttgttgccgaaatcctgtgtagacttcccgtgaaattactccttcaatttcgctgcgtctgcaagtctttcaaat |
1463 |
T |
|
| Q |
230 |
ctttaatctctgatc |
244 |
Q |
| |
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| ||||| ||||||| |
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|
| T |
1464 |
cgttaatttctgatc |
1478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0760 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0760
Description:
Target: scaffold0760; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 244
Target Start/End: Original strand, 3858 - 3972
Alignment:
| Q |
130 |
ccactacccacgcttccgtttgatcttgttgcagaaattttgtgtagaattccggtaaagttactcattcagcttcgctgcctctgtaagtgcttcaatt |
229 |
Q |
| |
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|||||||||| |||||||| ||||||||||| ||||| ||||||| |||| || || |||||| |||| |||||||| |||| |||| ||||| | |
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|
| T |
3858 |
ccactacccagtcttccgttagatcttgttgccgaaatcctgtgtaggcttcccgtgaaattactccttcaatttcgctgcgtctgcaagtctttcaaat |
3957 |
T |
|
| Q |
230 |
ctttaatctctgatc |
244 |
Q |
| |
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| ||||| ||||||| |
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|
| T |
3958 |
ccttaatttctgatc |
3972 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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