View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1404_high_11 (Length: 543)
Name: NF1404_high_11
Description: NF1404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1404_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 311 - 533
Target Start/End: Complemental strand, 45524780 - 45524558
Alignment:
| Q |
311 |
tcatagcatatataagaaaaggactagacttacgggacaacagcagcatcagaaattttgggatgagagagaagaagagcttcaagttcagctggagcaa |
410 |
Q |
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| T |
45524780 |
tcatagcatatataagaaaaggactagacttacgggacaacagcagcatcagaaattttgggatgagacagaagaagagcttcaagttcagctggagcaa |
45524681 |
T |
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| Q |
411 |
cttgaaatcctttgtatttgattaattccttcaatctatcaacaatgaataactcatcatcttcatcaatatacccaatatcacctgtatacaaccaacc |
510 |
Q |
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| T |
45524680 |
cttgaaatcctttgtatttgattaattccttcaatctatcaacaatgaataactcatcatcttcatcaatatacccaatatcacctgtatacaaccaacc |
45524581 |
T |
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| Q |
511 |
ttctttgtctatggttctctctg |
533 |
Q |
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| T |
45524580 |
ttctttgtctatggttctctctg |
45524558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 33 - 226
Target Start/End: Complemental strand, 45525052 - 45524860
Alignment:
| Q |
33 |
tcatgtaaaagttaaaaggttgtgaatacagatttagaaaattaatgtattgaaataaatattgaaaagggaaggaagaaaaagaacctgtttggagata |
132 |
Q |
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| T |
45525052 |
tcatgtaaaagttaaa-ggttgtgaatacagatttagaaaattaatgtattgaaataaatattgaaaagggaaggaagaaaaagaacctgtttggagata |
45524954 |
T |
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| Q |
133 |
aagtgcttaatttcatcttgagttaagtcagtgtaaccatttgatctcaccacaaatgcaacaggtacctctccagccgcttcatccttcattc |
226 |
Q |
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| T |
45524953 |
aagtgcttaatttcatcttgagttaagtcagtgtaaccatttgatctcaccacaaatgcaacaggtacctctccagccgcttcatccttcattc |
45524860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 77; Significance: 2e-35; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 338 - 522
Target Start/End: Complemental strand, 352246 - 352062
Alignment:
| Q |
338 |
acttacgggacaacagcagcatcagaaattttgggatgagagagaagaagagcttcaagttcagctggagcaacttgaaatcctttgtatttgattaatt |
437 |
Q |
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||||||||||| ||||| |||| ||||||| ||||| ||||||| || ||||||||||||||||||||||||||||| ||||||||||| || |||| |
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| T |
352246 |
acttacgggacgacagcgacatcggaaatttgaggatgtgagagaataatggcttcaagttcagctggagcaacttgaaaacctttgtatttaatcaatt |
352147 |
T |
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| Q |
438 |
ccttcaatctatcaacaatgaataactcatcatcttcatcaatatacccaatatcacctgtatacaaccaaccttctttgtctat |
522 |
Q |
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| T |
352146 |
ctttaagtctatcaactatgaacaactcatcatcatcgtcaatgaatccaatgtcaccagtatgcaaccaaccttccttgtctat |
352062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 338 - 530
Target Start/End: Complemental strand, 53458577 - 53458385
Alignment:
| Q |
338 |
acttacgggacaacagcagcatcagaaattttgggatgagagagaagaagagcttcaagttcagctggagcaacttgaaatcctttgtatttgattaatt |
437 |
Q |
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|||||||| || ||||||||||||||||| || ||||||| | | | ||||| || ||||| ||||| ||||| ||||||||||||| || |||| |
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| T |
53458577 |
acttacggtacgacagcagcatcagaaatgtttggatgagcaatcaacaatgcttcgagctcagcaggagctacttggtatcctttgtatttaatcaatt |
53458478 |
T |
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| Q |
438 |
ccttcaatctatcaacaatgaataactcatcatcttcatcaatatacccaatatcacctgtatacaaccaaccttctttgtctatggttctct |
530 |
Q |
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|||| |||| |||||||||||| | || || || || ||||| | ||||| |||||||| | | ||| |||||||||||||| ||||||| |
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| T |
53458477 |
cctttaatcgatcaacaatgaagagttcgtcgtcgtcgtcaattaaaccaatgtcacctgtttgtagccatccttctttgtctatagttctct |
53458385 |
T |
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