View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1404_high_113 (Length: 259)
Name: NF1404_high_113
Description: NF1404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1404_high_113 |
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| [»] chr8 (2 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 30 - 259
Target Start/End: Complemental strand, 33162427 - 33162198
Alignment:
| Q |
30 |
ccgattacattggacgtcgctacacaatcttcttagcttcaatattgttcatccttggtgcaggtctaatggggtatggtccaaactacgcaattttaat |
129 |
Q |
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| T |
33162427 |
ccgattacattggacgtcgctacacaatcttcttagcttcaatattgttcatccttggtgcaggtctaatggggtatggtccaaactacgcaattttaat |
33162328 |
T |
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| Q |
130 |
ggttggaagatgtgtttgcggtgtaggtgttggttttgctcttatgatagcaccagtttattcagctgaaatttcttctgcttcatcaagaggattctta |
229 |
Q |
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| T |
33162327 |
ggttggaagatgtgtttgcggtgtaggtgttggttttgctcttatgatagcaccagtttattcagctgaaatttcttctgcttcatcaagaggattctta |
33162228 |
T |
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| Q |
230 |
acctctttacctgaactttgtattggtatt |
259 |
Q |
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| T |
33162227 |
acctctttacctgaactttgtattggtatt |
33162198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 156 - 259
Target Start/End: Original strand, 32769907 - 32770010
Alignment:
| Q |
156 |
gtgttggttttgctcttatgatagcaccagtttattcagctgaaatttcttctgcttcatcaagaggattcttaacctctttacctgaactttgtattgg |
255 |
Q |
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| T |
32769907 |
gtgttggtttttctcttttgatagcactggtttattcggttgaaatttcttctacttcatcaggaggtttactgacctatttgtctgaactttgtattgg |
32770006 |
T |
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| Q |
256 |
tatt |
259 |
Q |
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|||| |
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| T |
32770007 |
tatt |
32770010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 30 - 259
Target Start/End: Complemental strand, 31989258 - 31989029
Alignment:
| Q |
30 |
ccgattacattggacgtcgctacacaatcttcttagcttcaatattgttcatccttggtgcaggtctaatggggtatggtccaaactacgcaattttaat |
129 |
Q |
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| T |
31989258 |
ccgattacatcggtcgtcgctacacaatcttcttagcctctgtactcttcatcattggtgcaattctaatggggtacggtccaaattacacaattttaat |
31989159 |
T |
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| Q |
130 |
ggttggaagatgtgtttgcggtgtaggtgttggttttgctcttatgatagcaccagtttattcagctgaaatttcttctgcttcatcaagaggattctta |
229 |
Q |
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| T |
31989158 |
gatcgggcgatgtatttgtggtataggtgttggttttgctctcatggtagcaccagtttattcagcagaaatttcatctgcacattcaagaggtttatta |
31989059 |
T |
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| Q |
230 |
acctctttacctgaactttgtattggtatt |
259 |
Q |
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| T |
31989058 |
gcctctttacctgagctctgtattggtatt |
31989029 |
T |
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