View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1404_high_13 (Length: 509)
Name: NF1404_high_13
Description: NF1404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1404_high_13 |
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Alignment Details
Target: chr8 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 29 - 461
Target Start/End: Complemental strand, 35350202 - 35349770
Alignment:
| Q |
29 |
agtaacaattatgaccgcctataatttttatagttataaccaaccactgcaataacctaaatatggatgttagcattgtcctgagaattatataatggaa |
128 |
Q |
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|||||||| |||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
35350202 |
agtaacaaatatggccgcctataatttttatagttataaccaactactgcaataacctaaatatggatgttagcactgtcctgagaattatataatggaa |
35350103 |
T |
|
| Q |
129 |
ctaaatcagacagaaatttaattaaggaccaactaaggtctgaacacaatttgatagtcaggttaggacatgaagctaactaccttatttacctgaactt |
228 |
Q |
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| T |
35350102 |
ctaaatcggacagaaatttaattaaggaccaactaaggtctgaacacaatttgatagtcaggttaggacatgacgctaactaccttatttacctgaactt |
35350003 |
T |
|
| Q |
229 |
gacagcttgtttgattaagcaaagatgttttatgttatgaagatttgtctgtatgcattggaccatatgtaacttaaaaaatacttgcaaggttcacacc |
328 |
Q |
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| T |
35350002 |
gacagcttgtttgattaagcaaagatgttttatgttatgaagatttgtctgtatgcattggaccatatgtaacttaaaaaatacttgcaagtttcacacc |
35349903 |
T |
|
| Q |
329 |
acaacacgtaaaagttatgcaatcattttaaatcgcccctacctcctacataaaccatagaaacccaagaaccaacagggacgttgaaaaagtccttgag |
428 |
Q |
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| T |
35349902 |
acaacacgtaaaagttatgcaatcattttaaattgcccctacatcctacataaaccatagaaacccaagaaccaacagggacgttgaaaaagtccttgag |
35349803 |
T |
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| Q |
429 |
ggcgtgccaacctgttgtgaggtaaatccggcc |
461 |
Q |
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| T |
35349802 |
ggcgtgccaacctgttgtggggtaaatccggcc |
35349770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 183; Significance: 9e-99; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 9e-99
Query Start/End: Original strand, 265 - 471
Target Start/End: Original strand, 38466738 - 38466944
Alignment:
| Q |
265 |
atgaagatttgtctgtatgcattggaccatatgtaacttaaaaaatacttgcaaggttcacaccacaacacgtaaaagttatgcaatcattttaaatcgc |
364 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
38466738 |
atgaagatttgtctgtatgcattagaccatatgtaacttaaaaaatacttgcaaggttcacaccacaacacgtaaaagttatgcaatcattttaaattgc |
38466837 |
T |
|
| Q |
365 |
ccctacctcctacataaaccatagaaacccaagaaccaacagggacgttgaaaaagtccttgagggcgtgccaacctgttgtgaggtaaatccggccttt |
464 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || || |
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| T |
38466838 |
ccctacctcctacataaaccatagaaacccaagaaccaacagggacgttgaaaaagtccttgagggggtgccaacctgttgtgaggtaaatccgaccatt |
38466937 |
T |
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| Q |
465 |
gcttctc |
471 |
Q |
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| ||||| |
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| T |
38466938 |
gtttctc |
38466944 |
T |
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