View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1404_high_14 (Length: 506)
Name: NF1404_high_14
Description: NF1404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1404_high_14 |
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Alignment Details
Target: chr5 (Bit Score: 433; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 15 - 497
Target Start/End: Complemental strand, 10007832 - 10007352
Alignment:
| Q |
15 |
cttagctgaggaacggggtggacacgatactatcatggcaagaggtccatcgaatggtggagatgtcagctcttcacgtcctaagttccctcccgaggaa |
114 |
Q |
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| T |
10007832 |
cttagctgaggaacggggtggacacgatactatcatggcaagaggtccatcgaatggtggagatgtcagctcttcacgtcctaagttccctcccgaggaa |
10007733 |
T |
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| Q |
115 |
gatcttgcacctcattttacatctgaaacttgtggcggaagtcaatcacgtgtgatgcaggatagactgcacgggaaaaattctgtaaaaatagacccaa |
214 |
Q |
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| T |
10007732 |
gatcttgcaaatcattttacatctgaaacttgtggcggaagtcaatcacgtgtgatgcaggatagactgcacgggaaaaattctgtaaaaatagaccaaa |
10007633 |
T |
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| Q |
215 |
gttacttgaaaacacttggccaggctcactctggatggatttttggtggaatagctgagcttgttgataattcgagtgatgccaaagcaactaagtaggt |
314 |
Q |
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| T |
10007632 |
gttacttgaaaacacttggccaggctcactctggatggatttttggtggaatagctgagcttgttgataattcgagtgatgccaaagcaactaagtaggt |
10007533 |
T |
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| Q |
315 |
ttatgnnnnnnnnnncctgccactgttgtcatgtttttgtccttgttaccaaacttgctatcaataatgtgtatttttctaacatctagaatttttcttg |
414 |
Q |
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| T |
10007532 |
ttatgttttttttt--ctgccactgttgtcatgtttttgtccttgttaccaaacttgctatcaataatgtgtatttttctaacatctagaatttttcttg |
10007435 |
T |
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| Q |
415 |
gtaaggcttttggtttgaggttaaaagttttaaggagtattaataaatttatcaatcttcgcatcttggagttggttctgtgg |
497 |
Q |
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| T |
10007434 |
gtaaggcttttggtttgaggttaaaagttttaaggagtattaataaatttatcaatcttcgcatcttggagttggttctgtgg |
10007352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 229 - 296
Target Start/End: Complemental strand, 28761618 - 28761551
Alignment:
| Q |
229 |
cttggccaggctcactctggatggatttttggtggaatagctgagcttgttgataattcgagtgatgc |
296 |
Q |
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|||| ||| ||||||||||||||||||||||||||| |||| || |||||||||||||| || ||||| |
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| T |
28761618 |
cttgtccaagctcactctggatggatttttggtggattagccgaacttgttgataattcaagggatgc |
28761551 |
T |
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