View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1404_high_147 (Length: 203)
Name: NF1404_high_147
Description: NF1404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1404_high_147 |
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Alignment Details
Target: chr1 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 4195171 - 4195270
Alignment:
| Q |
1 |
tttcattgcaagaacttcaaaaacacaacactcgcggcgatgcatggatctccattgacggcaagatctacgacgtttcaaaatgggccaaccaccatcc |
100 |
Q |
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| T |
4195171 |
tttcattgcaagaacttcaaaaacacaacactcgcggcgatgcatggatctccattgacggcaagatctacgacgtttcaaaatgggccaaccaccatcc |
4195270 |
T |
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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 52 - 100
Target Start/End: Original strand, 4186190 - 4186238
Alignment:
| Q |
52 |
ccattgacggcaagatctacgacgtttcaaaatgggccaaccaccatcc |
100 |
Q |
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| T |
4186190 |
ccattgacggcaagatatacgacgtctctaaatgggccaaccaccatcc |
4186238 |
T |
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