View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1404_high_18 (Length: 471)

Name: NF1404_high_18
Description: NF1404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1404_high_18
NF1404_high_18
[»] chr3 (7 HSPs)
chr3 (29-401)||(25991044-25991416)
chr3 (73-120)||(25991464-25991511)
chr3 (95-147)||(47964938-47964990)
chr3 (75-127)||(54018241-54018293)
chr3 (75-133)||(8327967-8328025)
chr3 (75-137)||(39914315-39914377)
chr3 (83-127)||(54017859-54017903)
[»] chr7 (3 HSPs)
chr7 (73-264)||(33773297-33773487)
chr7 (83-136)||(33773613-33773666)
chr7 (75-127)||(45433304-45433356)
[»] chr5 (4 HSPs)
chr5 (73-135)||(32445946-32446008)
chr5 (87-147)||(39003616-39003676)
chr5 (54-127)||(25327977-25328050)
chr5 (75-127)||(27502079-27502131)
[»] chr4 (1 HSPs)
chr4 (82-126)||(2891864-2891908)
[»] chr8 (1 HSPs)
chr8 (83-150)||(2441177-2441240)
[»] chr6 (2 HSPs)
chr6 (75-169)||(26544112-26544206)
chr6 (75-147)||(10074014-10074086)
[»] chr2 (1 HSPs)
chr2 (75-120)||(40679679-40679724)
[»] chr1 (1 HSPs)
chr1 (83-127)||(11977351-11977395)


Alignment Details
Target: chr3 (Bit Score: 341; Significance: 0; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 29 - 401
Target Start/End: Original strand, 25991044 - 25991416
Alignment:
Q  29 atatctcacattggatggacaagtgaagttgaacacttattaattgagagaacccataaacctaacgccttaagattttgggttaaagtgtgatgtctcc 128  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||    
T  25991044 atatctcacattggatggacaagtgaagttgaatacttaataattgagagaacccgtaaacctaacgccttaagattttgggttaaagtttgatgtctcc 25991143  T
Q  129 ctcacttatatgattgttcaaggctcaatgtgaagattccctgaaccccctcatgatccaatagtggtataagagtcgaggttcgacaaaggttcgactg 228  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25991144 ctcacttatatgattgttcaaggctcaatgtgaagattctctgaaccccctcatgatccaatagtggtataagagtcgaggttcgacaaaggttcgactg 25991243  T
Q  229 acaccttgtgttgaaagtctttgtgactaagggtgtcaggtggcgagctctattgtgtgtggaggcaacgacagtacaagtacaaatggacgaaaaagct 328  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  25991244 acaccttgtgttgaaagtctttgtgactaagggtgtcaggtggcgagctctattgtgtgtggaggcaacggcggtacaagtacaaatggacgaaaaagct 25991343  T
Q  329 tttggttgagggggagtatacccataaagaataaatggactcaacgtgattgttggtatatcaagtgtgagta 401  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  25991344 tttggttgagggggagtatacccataaagaataaatggactcaacgtgatcgttggtatatcaagtgtgagta 25991416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 73 - 120
Target Start/End: Original strand, 25991464 - 25991511
Alignment:
Q  73 tgagagaacccataaacctaacgccttaagattttgggttaaagtgtg 120  Q
    |||||||||| |||||||||| |||||||| |||||||||||||||||    
T  25991464 tgagagaacctataaacctaatgccttaaggttttgggttaaagtgtg 25991511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 95 - 147
Target Start/End: Complemental strand, 47964990 - 47964938
Alignment:
Q  95 gccttaagattttgggttaaagtgtgatgtctccctcacttatatgattgttc 147  Q
    ||||||||||||||||| | ||||||  ||||| |||||||||||||||||||    
T  47964990 gccttaagattttgggtaagagtgtggcgtctctctcacttatatgattgttc 47964938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 75 - 127
Target Start/End: Complemental strand, 54018293 - 54018241
Alignment:
Q  75 agagaacccataaacctaacgccttaagattttgggttaaagtgtgatgtctc 127  Q
    |||| ||||||||||||||||||||||| |||||||| | |||||| ||||||    
T  54018293 agaggacccataaacctaacgccttaaggttttgggtaagagtgtggtgtctc 54018241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 75 - 133
Target Start/End: Original strand, 8327967 - 8328025
Alignment:
Q  75 agagaacccataaacctaacgccttaagattttgggttaaagtgtgatgtctccctcac 133  Q
    ||||||||||||||| ||| |||||||| |||||||| | |||||| |||||| |||||    
T  8327967 agagaacccataaacgtaatgccttaaggttttgggtaagagtgtggtgtctctctcac 8328025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 75 - 137
Target Start/End: Original strand, 39914315 - 39914377
Alignment:
Q  75 agagaacccataaacctaacgccttaagattttgggttaaagtgtgatgtctccctcacttat 137  Q
    |||| |||||||||||||| ||||||| ||||||| | | |||||| |||||| |||||||||    
T  39914315 agaggacccataaacctaatgccttaatattttggataagagtgtggtgtctctctcacttat 39914377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 83 - 127
Target Start/End: Complemental strand, 54017903 - 54017859
Alignment:
Q  83 cataaacctaacgccttaagattttgggttaaagtgtgatgtctc 127  Q
    |||||||||||||||||||| |||||||| | |||||| ||||||    
T  54017903 cataaacctaacgccttaaggttttgggtaagagtgtggtgtctc 54017859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 9e-28; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 73 - 264
Target Start/End: Original strand, 33773297 - 33773487
Alignment:
Q  73 tgagagaacccataaacctaacgccttaagattttgggttaaagtgtgatgtctccctcacttatatgattgttcaaggctcaatgtgaagattccctga 172  Q
    |||||| ||||||||| |||| |  |||||||||||||||||||||||| |||||| |||||||||||| |||| || |  | |||||| || ||||  |    
T  33773297 tgagaggacccataaatctaatgttttaagattttgggttaaagtgtgaggtctccttcacttatatgactgttaaatgaccgatgtgatga-tccccca 33773395  T
Q  173 accccctcatgatccaatagtggtataagagtcgaggttcgacaaaggttcgactgacaccttgtgttgaaagtctttgtgactaagggtgt 264  Q
      ||||||||||||||| ||||| || ||||||||||||| ||||||||||||| ||  ||||| || |||||||||| |||  ||||||||    
T  33773396 gacccctcatgatccaacagtggaatcagagtcgaggttcaacaaaggttcgaccgaatccttgggtcgaaagtctttctgatcaagggtgt 33773487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 83 - 136
Target Start/End: Original strand, 33773613 - 33773666
Alignment:
Q  83 cataaacctaacgccttaagattttgggttaaagtgtgatgtctccctcactta 136  Q
    ||||||| ||| | ||||| |||||||||||||||||||||| || ||||||||    
T  33773613 cataaacttaatgtcttaaaattttgggttaaagtgtgatgtatctctcactta 33773666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 75 - 127
Target Start/End: Original strand, 45433304 - 45433356
Alignment:
Q  75 agagaacccataaacctaacgccttaagattttgggttaaagtgtgatgtctc 127  Q
    ||||||| ||||||||||  ||||||||||||||||| | |||||| ||||||    
T  45433304 agagaactcataaacctattgccttaagattttgggtaagagtgtggtgtctc 45433356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 73 - 135
Target Start/End: Original strand, 32445946 - 32446008
Alignment:
Q  73 tgagagaacccataaacctaacgccttaagattttgggttaaagtgtgatgtctccctcactt 135  Q
    |||||| ||||||||||| ||||||||||| ||||||||||||||||| |||||| |||||||    
T  32445946 tgagaggacccataaacccaacgccttaaggttttgggttaaagtgtggtgtctctctcactt 32446008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 87 - 147
Target Start/End: Original strand, 39003616 - 39003676
Alignment:
Q  87 aacctaacgccttaagattttgggttaaagtgtgatgtctccctcacttatatgattgttc 147  Q
    ||||||| | |||||||||||| |||||| |||| ||| || |||||||||||||||||||    
T  39003616 aacctaatgtcttaagattttgagttaaaatgtggtgtttctctcacttatatgattgttc 39003676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 127
Target Start/End: Original strand, 25327977 - 25328050
Alignment:
Q  54 aagttgaacacttattaattgagagaacccataaacctaacgccttaagattttgggttaaagtgtgatgtctc 127  Q
    ||||||||||| |  ||| | |||| |||||||||||||| |||||||| |||||||| | |||||| ||||||    
T  25327977 aagttgaacaccttataagtaagaggacccataaacctaatgccttaaggttttgggtaagagtgtggtgtctc 25328050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 75 - 127
Target Start/End: Complemental strand, 27502131 - 27502079
Alignment:
Q  75 agagaacccataaacctaacgccttaagattttgggttaaagtgtgatgtctc 127  Q
    |||| |||||||||||||  ||||||||||||| ||| |||||||| ||||||    
T  27502131 agaggacccataaacctattgccttaagatttttggtaaaagtgtggtgtctc 27502079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 82 - 126
Target Start/End: Complemental strand, 2891908 - 2891864
Alignment:
Q  82 ccataaacctaacgccttaagattttgggttaaagtgtgatgtct 126  Q
    |||||||||||| | |||||| |||||||||||||||||||||||    
T  2891908 ccataaacctaatgtcttaaggttttgggttaaagtgtgatgtct 2891864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 83 - 150
Target Start/End: Complemental strand, 2441240 - 2441177
Alignment:
Q  83 cataaacctaacgccttaagattttgggttaaagtgtgatgtctccctcacttatatgattgttcaag 150  Q
    ||||| ||||| | |||||| |||||||||||||| ||||||    ||||||||||||||||||||||    
T  2441240 cataatcctaatgtcttaaggttttgggttaaagtatgatgt----ctcacttatatgattgttcaag 2441177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 75 - 169
Target Start/End: Original strand, 26544112 - 26544206
Alignment:
Q  75 agagaacccataaacctaacgccttaagattttgggttaaagtgtgatgtctccctcacttatatgattgttcaaggctcaatgtgaagattccc 169  Q
    |||| ||||||||||| | ||||||||| ||||| || | ||||||||||||| ||  ||| |  |||||||| || ||||||||||||| ||||    
T  26544112 agaggacccataaacccaccgccttaaggttttgagtaagagtgtgatgtctctcttgcttgtgcgattgttctagcctcaatgtgaagagtccc 26544206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 75 - 147
Target Start/End: Complemental strand, 10074086 - 10074014
Alignment:
Q  75 agagaacccataaacctaacgccttaagattttgggttaaagtgtgatgtctccctcacttatatgattgttc 147  Q
    |||| ||||||||||| |  |||||||| |||||||| |||||||| |||||| ||| ||||| || ||||||    
T  10074086 agaggacccataaacccattgccttaaggttttgggtaaaagtgtggtgtctctctcgcttatttggttgttc 10074014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 75 - 120
Target Start/End: Complemental strand, 40679724 - 40679679
Alignment:
Q  75 agagaacccataaacctaacgccttaagattttgggttaaagtgtg 120  Q
    |||||||||||||||| | |||||||||||||||||| | ||||||    
T  40679724 agagaacccataaacccatcgccttaagattttgggtaagagtgtg 40679679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 83 - 127
Target Start/End: Original strand, 11977351 - 11977395
Alignment:
Q  83 cataaacctaacgccttaagattttgggttaaagtgtgatgtctc 127  Q
    ||||||||||| |||||||| |||||||| | |||||||||||||    
T  11977351 cataaacctaatgccttaaggttttgggtaagagtgtgatgtctc 11977395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University