View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1404_high_29 (Length: 421)
Name: NF1404_high_29
Description: NF1404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1404_high_29 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 139 - 390
Target Start/End: Complemental strand, 30849197 - 30848946
Alignment:
| Q |
139 |
gcttccaaagactcttccattctcatacacaagaacaagtttcacaaacttggtcgtaatctttctgatgcaatcacatctttcaaaaacacactcaacc |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30849197 |
gcttccaaagactcttccattctcatacacaagaacaagtttcacaaacttggtcgtaatctttctgatgcaatcacatctttcaaaaacacactcaacc |
30849098 |
T |
|
| Q |
239 |
ttaataatactaacaatcctgagtctcctccttcttctaagaaacttgcttgggcttctgttcttcgtaatcttactcaactttatcctggaactcagct |
338 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |
|
|
| T |
30849097 |
ttaataatactaacaatcctgagtctcctccttcttctaagaaacttgcttgggcttctgttcttcgtaatcttactcaactctaccctggaactcagct |
30848998 |
T |
|
| Q |
339 |
tcctgataatcttatctccaccattcgtaatcattacaattctcttcctctc |
390 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30848997 |
tcctgataatcttatctccaccattcgtaatcattacaattctcttcctctc |
30848946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 30 - 88
Target Start/End: Original strand, 52068799 - 52068857
Alignment:
| Q |
30 |
acaagtccctaactaagttaagctattttctttaaatgttgcagaataatctacccacc |
88 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
52068799 |
acaagtccctaactaagttaagctattttctttaaatgttgcataataataaacccacc |
52068857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 307 - 368
Target Start/End: Complemental strand, 26561534 - 26561473
Alignment:
| Q |
307 |
aatcttactcaactttatcctggaactcagcttcctgataatcttatctccaccattcgtaa |
368 |
Q |
| |
|
||||||||||| ||||||||||| | ||||||||||| || ||||| |||| ||||||||| |
|
|
| T |
26561534 |
aatcttactcagctttatcctggtagccagcttcctgaaaagcttatgtccaacattcgtaa |
26561473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University