View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1404_high_33 (Length: 416)
Name: NF1404_high_33
Description: NF1404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1404_high_33 |
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Alignment Details
Target: chr2 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 30 - 327
Target Start/End: Original strand, 41071314 - 41071611
Alignment:
| Q |
30 |
cgcagttcacaaaatatcgacatttaatgtttataaatttcacatcaaaccattgactgttcataactttaatgatgaagaaacacagtgtacccacccc |
129 |
Q |
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| T |
41071314 |
cgcagttcacaaaatatcgacatttaatgtttataaatttcacatcaaaccattgactgttcataactttaatgatgaagaaacacagtgtacccacccc |
41071413 |
T |
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| Q |
130 |
aatcccagtaggttcaagttcaagtatatggcattaaattggttaggaaattttaatagatttttctttgatcacaagctgcacatgtctacctggtgat |
229 |
Q |
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| T |
41071414 |
aatcccagtaggttcaagttcaagtatatggcattaaattggttaggaaattttaatagatttttctttgatcacaagctgcacatgtctacctggtgat |
41071513 |
T |
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| Q |
230 |
ggggcccacctcatggatttggcacacgcaaatgttctgtaacatgaattatgaacactttattcatcaaccaaccaaccataccgtatgacgtttgt |
327 |
Q |
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| T |
41071514 |
ggggcccacctcatggatttggcacacgcaaatgttctgtaacatgaattatgaacactttattcatcaaccaaccaaccataccgtatgacgtttgt |
41071611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 324 - 392
Target Start/End: Original strand, 41071657 - 41071725
Alignment:
| Q |
324 |
ttgtgttgtgttgagattttttggtttggtatctgttcctttctggtccaatgttattattctgtggtg |
392 |
Q |
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| T |
41071657 |
ttgtgttgtgttgagattttttggtttggtatctgttcctttctggtccaatgttattattctatggtg |
41071725 |
T |
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