View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1404_high_5 (Length: 695)
Name: NF1404_high_5
Description: NF1404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1404_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 559; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 559; E-Value: 0
Query Start/End: Original strand, 30 - 680
Target Start/End: Complemental strand, 32084739 - 32084093
Alignment:
| Q |
30 |
caatccacccttggtgaaacccaaactcttacagcctccaaaattgacgacattttccacaaatttgcctcccttgaaatacccattccctctgattctg |
129 |
Q |
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| T |
32084739 |
caatccacccttggtgaaacccaaactcttacggcctccaaaattgacgacattctccacaaattagcgtcccttgaaatacccattccctctaattctg |
32084640 |
T |
|
| Q |
130 |
cttcccttccaccaccatccatcccttcctcctgccaaactacaatcacaatgtatgaagctcgatgtaccatgaaattttagcatcttgtagtgacctc |
229 |
Q |
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| T |
32084639 |
cttcccttccaccaccatccatcccttcctcctgccaaactacaat------gtatgaagctcgatgtaccatgaaattttagcatcttgtagtgacctc |
32084546 |
T |
|
| Q |
230 |
gccattaggcttagaatttgttgtaacctgaatttgatagtgggctatgtaacatccctggtcatttgctctaacgagtcttagcatctttagtccatta |
329 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
32084545 |
gccattaggcttagaatttgttgtaacctgaatttgatagtgggctatgtaacatccctggtcatttgctctaactagtcttagcatctttagtccatta |
32084446 |
T |
|
| Q |
330 |
ggctttgaacttgatgtgaacctgaattttatcacacataattacgattgttatgtggttactctaaaggttttagatatgattatatgatgattgtgca |
429 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
32084445 |
ggctttgaacttgatgtgaacctgaattttatcagacataattacaattgttatgtggttactctaaaggttttaaatatgattatatgatgattgtgca |
32084346 |
T |
|
| Q |
430 |
agcaaggttggttatgaaaacattttatgctatgttgtgtgtttgtcctgatggtgtgcattttgagaagttttgtgattcaagtcaaaatcgaatataa |
529 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
32084345 |
agcaagattggttatgaaaacattttatgctatgttgtgtgtttgtcctgatggtgtgcattttgagaagttttgtgattcaagtcaaaatcaaatataa |
32084246 |
T |
|
| Q |
530 |
attgctgtgattaaagttttgagttgactttaagggatgtcatattttaatcagatagtttgtttttcattatagcgagtttttaaatcgttacattttt |
629 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
32084245 |
attattgtgattaaagttttgagttgactttaagggatgtcatattttaatcagatagtttgtttttcattatagtgagtttttaaatcgttacattttt |
32084146 |
T |
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| Q |
630 |
agagattctagaatgagaatggtttgagaaagaaagttt--gcgtgagtagat |
680 |
Q |
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| T |
32084145 |
agagattctagaatgagaatgttttgagaaagaaagtttacgcgtgagtagat |
32084093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 36 - 211
Target Start/End: Complemental strand, 32086198 - 32086029
Alignment:
| Q |
36 |
acccttggtgaaacccaaactcttacagcctccaaaattgacgacattttccacaaatttgcctcccttgaaatacccattccctctgattctgcttc-c |
134 |
Q |
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||||||| ||||| ||||||||| | |||||| |||||| |||||| ||||||| || ||||||||||| ||||||| || ||||| || |||||| | |
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| T |
32086198 |
acccttgttgaaatccaaactctcccggcctccctaattgatgacattctccacaagttagcctcccttgacatacccactctctctg-ttatgcttctc |
32086100 |
T |
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| Q |
135 |
cttccaccaccatccatcccttcctcctgccaaactacaatcacaatgtatgaagctcgatgtaccatgaaatttta |
211 |
Q |
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| T |
32086099 |
cttccaccatcaaccatcccctcctcctaccaaac------cacaccgcatgaagctcgatgtaccatgaaatttta |
32086029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 264 - 459
Target Start/End: Complemental strand, 32085960 - 32085758
Alignment:
| Q |
264 |
tgatagtgggctatgtaacatccctggtcatttgctctaacgagtcttagcatctttagtccattaggctttgaacttgatgtgaacctgaatttta--- |
360 |
Q |
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|||||||||| | ||||||||||||| | ||| |||||| | |||||||| ||| ||||||||||||||| ||| ||| ||||||||||||||||| |
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| T |
32085960 |
tgatagtgggttgtgtaacatccctgattattagctctagctagtcttagtatcgttagtccattaggctaagaatttgttgtgaacctgaattttatat |
32085861 |
T |
|
| Q |
361 |
--tcacacataattacgattgttatgtggttactctaaaggttt--tagatatgattatatgatgattgtgcaagcaaggttggttatgaaaacatttta |
456 |
Q |
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|| || |||||| |||||| |||||||||||| || || | | ||||||||||||||| |||||||| ||| | ||| ||||| ||| |||||| |
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| T |
32085860 |
gttctgacttaattataattgttgtgtggttactcttaaagtatgaaatatatgattatatgattattgtgcaggcatgattgattatggaaatatttta |
32085761 |
T |
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| Q |
457 |
tgc |
459 |
Q |
| |
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||| |
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| T |
32085760 |
tgc |
32085758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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